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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital hypoplasia of pancreas Permanent neonatal diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
PDX1(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital ichthyosis-intellectual disability-spastic quadriplegia syndrome Rosacea
1 gene
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1 of 1 corroborated by 2+ sources
ELOVL4(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital malabsorptive diarrhea Permanent neonatal diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
NEUROG3(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital malabsorptive diarrhea with diabetes mellitus and combined pituitary hormone deficiency Permanent neonatal diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
NEUROG3(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital microvillous atrophy Intestinal disease
1 gene
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1 of 1 corroborated by 2+ sources
MYO5B(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Distal myopathy IMPG1-related dominant retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 303 →
Distal myopathy IMPG1-related recessive retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 303 →
Distal myopathy IMPG2-related recessive retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 303 →
Distal myopathy inclusion body myopathy with Paget disease of bone and frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
VCP(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Intellectual developmental disorder microcephaly cerebellar Partington syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CASK(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 320 →
intellectual disability, X-linked 107 Partington syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STEEP1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 320 →
Intestinal disease normophosphatemic familial tumoral calcinosis
1 gene
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1 of 1 corroborated by 2+ sources
SAMD9(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital hypothyroidism Iodide peroxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TPO(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 88 →
Angle closure glaucoma isolated microphthalmia 6
1 gene
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1 of 1 corroborated by 2+ sources
PRSS56(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Bicuspid aortic valve keutel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MGP(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
kufor-rakeb syndrome Neurodegeneration with brain iron accumulation
1 gene
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1 of 1 corroborated by 2+ sources
ATP13A2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 92 →
Blindness Lactic acidosis
1 gene
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PMPCA(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Blindness LCA5-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
LCA5(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 241 →
20p12.3 microdeletion syndrome Hemochromatosis
1 gene
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1 of 1 corroborated by 2+ sources
BMP2(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Aceruloplasminemia Hemochromatosis
1 gene
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1 of 1 corroborated by 2+ sources
CP(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Acral self-healing collodion baby Lamellar ichthyosis
1 gene
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1 of 1 corroborated by 2+ sources
TGM1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 233 →
Acrokeratosis verruciformis Diabetic cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
ATP2A2(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 290 →
Aica-ribosiduria Blindness
1 gene
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1 of 1 corroborated by 2+ sources
ATIC(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Aica-ribosiduria Spondylometaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
ATIC(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 21 →
AIPL1-related retinopathy Blindness
1 gene
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1 of 1 corroborated by 2+ sources
AIPL1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 241 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.