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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Childhood-onset spinal muscular atrophy Rhizomelic chondrodysplasia punctata
1 gene
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1 of 1 corroborated by 2+ sources
DYNC1H1(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Cholesteatoma Vaginal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IL2(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Cholesteatoma Coagulation factor deficiency syndrome
1 gene
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F13B(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Cholesteatoma Congenital factor xiii deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F13B(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Cholesteatoma Factor xiii deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F13B(6)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Chorioretinal atrophy Choroideremia
1 gene
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1 of 1 corroborated by 2+ sources
CHM(7)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Choroidal dystrophy Choroideremia
1 gene
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1 of 1 corroborated by 2+ sources
PRPH2(5)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 45 →
Choroidal sclerosis Choroideremia
1 gene
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PRPH2(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 45 →
Paget disease Welander distal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
SQSTM1(4)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Hyperkalemia Paresthesia
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Immune system disorder Parkinson-dementia complex of guam
1 gene
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1 of 1 corroborated by 2+ sources
TRPM7(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 255 →
Arachnodactyly Perisylvian polymicrogyria
1 gene
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NSDHL(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 381 →
Growth hormone-secreting pituitary adenoma Pituitary gigantism
1 gene
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1 of 1 corroborated by 2+ sources
AIP(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 82 →
Post-operative atrial fibrillation Usher syndrome type 2
1 gene
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1 of 1 corroborated by 2+ sources
ADGRV1(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
qualitative platelet defect Tietz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ABCC4(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Refsum disease Rhizomelic chondrodysplasia punctata
1 gene
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1 of 1 corroborated by 2+ sources
PEX7(7)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
17p13.3 microduplication syndrome Endometrial stromal sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
YWHAE(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 223 →
Acetyl-coa acetyltransferase deficiency Carbohydrate metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
ACAT1(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Acid-base disorder Respiratory system neoplasm
1 gene
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ADH1B(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Andersen-tawil syndrome Congenital short qt syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ2(5)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Angiocentric glioma Hemoglobin e disease
1 gene
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1 of 1 corroborated by 2+ sources
MYB(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 19 →
Angiomatoid fibrous histiocytoma Ewing sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
EWSR1(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 35 →
Angiomatoid fibrous histiocytoma Extraskeletal myxoid chondrosarcoma
1 gene
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EWSR1(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Angiomatoid fibrous histiocytoma Skeletal ewing sarcoma
1 gene
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EWSR1(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
15q11q13 microduplication syndrome Angelman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UBE3A(7)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.