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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Acrokeratosis verruciformis Rhabdomyolysis
1 gene
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1 of 1 corroborated by 2+ sources
ATP2A2(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 290 →
Aicardi goutieres syndrome IFIH1-related type 1 interferonopathy
1 gene
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1 of 1 corroborated by 2+ sources
IFIH1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Aicardi goutieres syndrome Type i interferonopathy
1 gene
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1 of 1 corroborated by 2+ sources
TREX1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 150 →
Alexander disease Metachromatic leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
GFAP(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 118 →
amyloidosis, hereditary systemic 6 Bare lymphocyte syndrome
1 gene
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1 of 1 corroborated by 2+ sources
B2M(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
amyotrophic lateral sclerosis type 1 Turner syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOD1(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 285 →
amyotrophic lateral sclerosis type 10 Frontotemporal dementia with motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
TARDBP(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
amyotrophic lateral sclerosis type 11 Penile hypospadia
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 103 →
amyotrophic lateral sclerosis type 23 Connective tissue neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
ANXA11(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
amyotrophic lateral sclerosis type 6 Frontotemporal dementia with motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
FUS(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 102 →
amyotrophic lateral sclerosis type 6 Liposarcoma
1 gene
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1 of 1 corroborated by 2+ sources
FUS(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Arginase deficiency Urea cycle disorder
1 gene
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1 of 1 corroborated by 2+ sources
ARG1(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Bilateral parasagittal parieto-occipital polymicrogyria Penile hypospadia
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 103 →
Bisphosphoglycerate mutase deficiency Secondary polycythemia
1 gene
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1 of 1 corroborated by 2+ sources
BPGM(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 105 →
Blomstrand lethal chondrodysplasia Metaphyseal chondrodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
PTH1R(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Body mass index Growth retardation, developmental delay, and facial dysmorphism
1 gene
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1 of 1 corroborated by 2+ sources
FTO(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Body mass index Growth retardation, developmental delay, coarse facies, and early death
1 gene
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1 of 1 corroborated by 2+ sources
FTO(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Bohring-opitz syndrome Rubinstein-taybi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ASXL1(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Bone marrow neoplasms Mucositis
1 gene
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CSF3(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Bosma arhinia microphthalmia syndrome Facial nerve disorder
1 gene
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1 of 1 corroborated by 2+ sources
SMCHD1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 313 →
Brachydactyly-syndactyly syndrome Penile hypospadia
1 gene
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1 of 1 corroborated by 2+ sources
HOXD13(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Brachymesophalangy Penile hypospadia
1 gene
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HOXD13(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Brown oculocutaneous albinism Congenital nystagmus
1 gene
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OCA2(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Brown oculocutaneous albinism Prader-willi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
OCA2(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Camptosynpolydactyly Split hand-foot malformation
1 gene
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1 of 1 corroborated by 2+ sources
BHLHA9(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.