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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Wieacker syndrome X-linked syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ZC4H2(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Wieacker-wolff syndrome X-linked syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ZC4H2(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Niemann-pick disease Wolman disease
1 gene
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1 of 1 corroborated by 2+ sources
LIPA(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Accessory skin tag Wrinkly skin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
X-linked female restricted facial dysmorphism, short stature, choanal atresia, intellectual disability X-linked syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
USP9X(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 320 →
Charcot-marie-tooth disease, x-linked X-linked hereditary motor and sensory neuropathy
1 gene
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DRP2(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 15 →
Charcot-marie-tooth disease, x-linked X-linked hereditary sensory and autonomic neuropathy with deafness
1 gene
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1 of 1 corroborated by 2+ sources
AIFM1(6)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
X-linked myopathy with excessive autophagy X-linked syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
RPL10(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 320 →
Penile hypospadia Zygodactyly
1 gene
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1 of 1 corroborated by 2+ sources
HOXD13(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome Occupational dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
FOXP3(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
B-cell chronic lymphocytic leukemia immunodeficiency 84
1 gene
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1 of 1 corroborated by 2+ sources
IKZF3(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Cerebral embolism Infertility
1 gene
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1 of 1 corroborated by 2+ sources
KL(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Infertility Intracranial embolism
1 gene
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1 of 1 corroborated by 2+ sources
KL(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Infertility spermatogenic failure 5
1 gene
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1 of 1 corroborated by 2+ sources
AURKC(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 242 →
Intellectual developmental disorder expressive speech dysmorphic Penile hypospadia
1 gene
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1 of 1 corroborated by 2+ sources
SETBP1(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Intellectual developmental disorder microcephaly cerebellar X-linked syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
CASK(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 320 →
Hyperammonemia interstitial lung disease due to ABCA3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ABCA3(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 408 →
Intestinal cancer Paraganglioma
1 gene
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1 of 1 corroborated by 2+ sources
SDHD(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 81 →
Intestinal cancer Pheochromocytoma/paraganglioma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SDHD(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 81 →
hereditary nonpolyposis colon cancer karyomegalic interstitial nephritis
1 gene
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FAN1(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Krabbe disease due to saposin A deficiency Metachromatic leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
PSAP(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 118 →
Hoyeraal hreidarsson syndrome Revesz debuse syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TINF2(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Hoyeraal hreidarsson syndrome Revesz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TINF2(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Rhabdomyolysis Ventricular outflow obstruction
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Double outlet right ventricle Right isomerism
1 gene
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1 of 1 corroborated by 2+ sources
GDF1(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 113 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.