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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cardiac injury Wernicke-korsakoff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALDH2(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Polycystic kidney disease with tuberous sclerosis Xanthinuria
1 gene
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1 of 1 corroborated by 2+ sources
TSC2(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 70 →
Polycystic kidneys, severe infantile with tuberous sclerosis Xanthinuria
1 gene
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TSC2(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 70 →
Deafness, digenic Xeroderma
1 gene
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1 of 1 corroborated by 2+ sources
GJB2(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 322 →
Senter syndrome Xeroderma
1 gene
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GJB2(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Nephrotic syndrome, idiopathic, steroid-resistant Nephrotic syndrome, steroid-resistant, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
NPHS2(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Basal cell nevus syndrome nevoid basal cell carcinoma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PTCH1(4)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
nevoid basal cell carcinoma syndrome Rieger syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PTCH1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Bladder cancer Osteogenic sarcoma
1 gene
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RB1(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Bestrophinopathy Retinitis pigmentosa, digenic
1 gene
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PRPH2(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Doyne honeycomb retinal dystrophy Retinitis pigmentosa, digenic
1 gene
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PRPH2(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Ritscher-schinzler syndrome Stress urinary incontinence
1 gene
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1 of 1 corroborated by 2+ sources
WASHC5(6)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 188 →
Benign epithelial tumor of salivary glands Salivary gland disease
1 gene
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1 of 1 corroborated by 2+ sources
PLAG1(3)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Paroxysmal dystonic choreoathetosis Seizures, tonic-clonic, photosensitive
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ10(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 58 →
Sjogren-larsson syndrome Weber-cockayne syndrome
1 gene
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KRT14(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 269 →
Smith-lemli-opitz syndrome Syndactyly of the toes
1 gene
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1 of 1 corroborated by 2+ sources
DHCR7(7)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Spectrum and myeloid neoplasm risk Tumoral calcinosis
1 gene
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1 of 1 corroborated by 2+ sources
SAMD9(5)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Epilepsy with auditory features lissencephaly with cerebellar hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
RELN(3)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Esophageal varices Sweat gland disease
1 gene
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1 of 1 corroborated by 2+ sources
SST(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 270 →
Fanconi renotubular syndrome 4 with maturity-onset diabetes of the young Liddle syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SCNN1B(6)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Cenani-lenz syndrome Gastrointestinal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
APC(3)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 41 →
Glycoprotein ia deficiency Thrombasthenia
1 gene
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ITGA2(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Gorlin syndrome Tessier facial cleft
1 gene
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1 of 1 corroborated by 2+ sources
PTCH2(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 203 →
Greither disease Hallermanns syndrome
1 gene
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GJA1(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 92 →
Greither disease Schwartz-lelek syndrome
1 gene
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GJA1(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.