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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Embryonal nuclear cataract Sertoli-leydig cell tumor of ovary
1 gene
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DICER1(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
SH2B3-related immune system disorder Thrombocythemia
1 gene
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1 of 1 corroborated by 2+ sources
SH2B3(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
SH2B3-related immune system disorder Thrombocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SH2B3(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Silverman-Handmaker type dyssegmental dysplasia Stuve-wiedemann syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HSPG2(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Intestinal polyps Sleep deprivation
1 gene
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PTGS1(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
46,xx ovotesticular disorder of sex development SOX3-related X-linked pituitary hormone deficiency with or without intellectual developmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
SOX3(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
spermatogenic failure 18 Tumor predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNAH1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 389 →
Breast implant-associated anaplastic large cell lymphoma STAT3-related early-onset multisystem autoimmune disease
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Exanthema systemic lupus erythematosus related to C1QA
1 gene
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1 of 1 corroborated by 2+ sources
C1QA(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Eye pain Pancreatic diseases
1 gene
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POMC(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 376 →
Pancreatic diseases Rhabdomyoma
1 gene
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POMC(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 376 →
Pancreatic diseases Sacroiliitis
1 gene
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1 of 1 corroborated by 2+ sources
POMC(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 376 →
Diabetes microvascular complications Paraneoplastic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EPO(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 305 →
Alpha thalassemia x-linked intellectual disability Penile disease
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 122 →
Atr-x syndrome Penile disease
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 122 →
Penile disease X-linked alpha-thalassemia-intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 122 →
Eye pain Penile disease
1 gene
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POMC(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Peptic esophagitis Rickets
1 gene
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1 of 1 corroborated by 2+ sources
VDR(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 396 →
Embryonal nuclear cataract Periodic paralysis with transient compartment-like syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1S(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Intestinal polyps platelet-type bleeding disorder 12
1 gene
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1 of 1 corroborated by 2+ sources
PTGS1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cardiac valvular dysplasia PLD1-related congenital heart disease
1 gene
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1 of 1 corroborated by 2+ sources
PLD1(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 62 →
Popliteal pterygium syndrome Van der woude syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IRF6(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital insensitivity to pain Primary erythromelalgia
1 gene
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1 of 1 corroborated by 2+ sources
SCN9A(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 164 →
Prolidase deficiency Skin ulcer
1 gene
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1 of 1 corroborated by 2+ sources
PEPD(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 330 →
Pulmonary surfactant metabolism dysfunction Respiratory distress with surfactant metabolism deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.