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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Ambiguous genitalia Cryptophthalmia
1 gene
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1 of 1 corroborated by 2+ sources
FREM2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Ambiguous genitalia Cryptotria
1 gene
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FREM2(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Cooleys anemia Cyanosis
1 gene
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1 of 1 corroborated by 2+ sources
HBB(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 19 →
Cyanosis Dominant beta-thalassemia
1 gene
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1 of 1 corroborated by 2+ sources
HBB(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 19 →
Cystic kidney disease with ventriculomegaly Nephrotic syndrome, focal segmental type
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Cyanosis Cytochrome-b5 reductase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYB5R3(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Congenital hip dysplasia Deafness with cataract, intellectual disability, and polyneuropathy
1 gene
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1 of 1 corroborated by 2+ sources
PSMC3(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Deafness with labyrinthine aplasia, microtia, and microdontia Oculopalatosekeletal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGF3(7)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Delta zero thalassemia Hemoglobin e disease
1 gene
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1 of 1 corroborated by 2+ sources
HBD(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Delta-thalassemia Hemoglobin e disease
1 gene
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1 of 1 corroborated by 2+ sources
HBD(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Dermatofibrosis lenticularis disseminata Tietz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LEMD3(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 175 →
Ambiguous genitalia P450 oxidoreductase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
POR(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Chordoma PALB2-related cancer predisposition
1 gene
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1 of 1 corroborated by 2+ sources
PALB2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Paresthesia Ventricular outflow obstruction
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Paris-trousseau thrombocytopenia Skeletal ewing sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
FLI1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 309 →
Peripheral primitive neuroectodermal tumor Skeletal ewing sarcoma
1 gene
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FLI1(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 309 →
Liver cyst Periventricular heterotopia
1 gene
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PKD1(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Periventricular heterotopia X-linked lissencephaly
1 gene
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1 of 1 corroborated by 2+ sources
ARX(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 259 →
Periventricular heterotopia X-linked spasticity-intellectual disability-epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ARX(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 259 →
perrault syndrome 5 Ptosis
1 gene
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1 of 1 corroborated by 2+ sources
TWNK(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
perrault syndrome 5 Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis
1 gene
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1 of 1 corroborated by 2+ sources
TWNK(6)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 97 →
Post-operative atrial fibrillation primrose syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZBTB20(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Potassium-aggravated myotonia Sotos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SCN4A(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 163 →
progressive retinal dystrophy due to retinol transport defect Vitamin a deficiency
1 gene
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1 of 1 corroborated by 2+ sources
RBP4(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 24 →
Hereditary breast-ovarian cancer syndrome RAD51C-related cancer predisposition
1 gene
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1 of 1 corroborated by 2+ sources
RAD51C(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.