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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Bone mineral density quantitative trait locus LRP5-related exudative vitreoretinopathy
1 gene
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1 of 1 corroborated by 2+ sources
LRP5(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 98 →
Bone mineral density quantitative trait locus X-linked osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
PLS3(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 98 →
Borjeson-forssman-lehmann syndrome Congenital fusion of ribs
1 gene
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1 of 1 corroborated by 2+ sources
PHF6(7)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 398 →
Brain stem neoplasms Trisomy
1 gene
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CDKN2A(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 384 →
Brain stem neoplasms melanoma-pancreatic cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDKN2A(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 384 →
Brain stem neoplasms Intellectual developmental disorder growth other organ
1 gene
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1 of 1 corroborated by 2+ sources
PPM1D(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 384 →
Brain stem neoplasms melanoma, cutaneous malignant, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
CDK4(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Bronchiolitis Interstitial systitis
1 gene
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ADRB2(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 197 →
Budd-chiari syndrome Congenital factor v deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F5(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 37 →
Budd-chiari syndrome East texas bleeding disorder
1 gene
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1 of 1 corroborated by 2+ sources
F5(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 37 →
Bulbo-spinal atrophy, x-linked Male breast neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
AR(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 193 →
Bundle branch block Intellectual developmental disorder expressive speech dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
SETBP1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 271 →
Bundle branch block Schinzel-Giedion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SETBP1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 271 →
Camptocormia Rod-cone dystrophy, sensorineural deafness, and fanconi-type renal dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
RRM2B(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Camptocormia Myosin storage myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
Biventricular noncompaction cardiomyopathy Camptocormia
1 gene
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MYH7(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
Camptocormia MYH7-related skeletal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
Camptocormia dilated cardiomyopathy 1S
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
Carasil syndrome Cerebral microangiopathy
1 gene
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1 of 1 corroborated by 2+ sources
HTRA1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Carcinoid syndrome Carney-stratakis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SDHD(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 81 →
Carcinoid tumor Delpire-mcneill syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A2(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Carcinoma in situ Pericardial effusion
1 gene
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1 of 1 corroborated by 2+ sources
PTGS2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 375 →
Cardiac anomalies - developmental delay - facial dysmorphism syndrome Discordant ventriculoarterial connection
1 gene
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1 of 1 corroborated by 2+ sources
MED13L(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Cardiac injury quebec platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLAU(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 123 →
Cardiac injury dilated cardiomyopathy 1D
1 gene
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1 of 1 corroborated by 2+ sources
TNNT2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 123 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.