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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Intracranial embolism and thrombosis Postictal aphasia
1 gene
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1 of 1 corroborated by 2+ sources
PLAT(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Juvenile hyperuricemic nephropathy Tonne-kalscheuer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
REN(4)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 95 →
Lethal acantholytic epidermolysis bullosa Ventricular arrhythmia
1 gene
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1 of 1 corroborated by 2+ sources
DSP(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 201 →
macrothrombocytopenia, isolated Parkinson-dementia complex of guam
1 gene
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1 of 1 corroborated by 2+ sources
TRPM7(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 255 →
Ameloblastoma Tethered cord syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Anaplastic astrocytoma Tethered cord syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Craniopharyngioma Tethered cord syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Mitral valve disease Uterine disease
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Camurati-engelmann syndrome Van buchem disease
1 gene
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LRP5(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 98 →
Craniopharyngioma Vascular calcification
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 104 →
Congenital scoliosis Verloes-bourguignon syndrome
1 gene
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LTBP3(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 52 →
Senter syndrome Vohwinkel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJB2(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
15q24 microdeletion Witteveen-kolk syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SIN3A(4)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 343 →
X-linked centronuclear myopathy X-linked myotubular myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MTM1(4)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 59 →
Cone dystrophy, x-linked X-linked cone dysfunction syndrome with myopia
1 gene
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1 of 1 corroborated by 2+ sources
OPN1MW(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 214 →
Scapuloperoneal myopathy X-linked emery-dreifuss muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
FHL1(5)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Scapuloperoneal myopathy X-linked myopathy
1 gene
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1 of 1 corroborated by 2+ sources
FHL1(5)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
X-linked emery-dreifuss muscular dystrophy X-linked myopathy
1 gene
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1 of 1 corroborated by 2+ sources
FHL1(5)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 415 →
12q14 microdeletion syndrome Benign epithelial tumor of salivary glands
1 gene
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1 of 1 corroborated by 2+ sources
HMGA2(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
15q13.3 microdeletion syndrome Auditory perceptual disorder
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA7(5)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
15q13.3 microdeletion syndrome Congenital exomphalos
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA7(5)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 94 →
15q24 microdeletion Cardiac, facial, and digital anomalies with developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
MEIS2(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
17p11.2 microduplication syndrome Birt-hogg-dube syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLCN(7)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 347 →
22q13 monosomy syndrome Hyperkalemia
1 gene
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INS(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 112 →
Acid-base disorder Wernicke-korsakoff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ADH1B(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.