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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital hemangioma Cutis marmorata telangiectatica congenita
1 gene
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1 of 1 corroborated by 2+ sources
GNA11(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 40 →
Congenital hemangioma Port-wine stain
1 gene
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1 of 1 corroborated by 2+ sources
GNAQ(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 40 →
Congenital hereditary endothelial dystrophy Corneal endothelial dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A11(6)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 75 →
Pancreatic cyst Polycystic kidney disease with tuberous sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
PKD1(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 70 →
Pancreatic cyst Renovascular hypertension
1 gene
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PKD1(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 70 →
Parapsoriasis Thromboangiitis obliterans
1 gene
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1 of 1 corroborated by 2+ sources
HLA-A(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 1 →
Aphasia Paresis
1 gene
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1 of 1 corroborated by 2+ sources
PLAT(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Paresis Postictal aphasia
1 gene
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1 of 1 corroborated by 2+ sources
PLAT(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Pancreatic hypoplasia-diabetes-congenital heart disease syndrome Partial atrioventricular canal defect
1 gene
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1 of 1 corroborated by 2+ sources
GATA4(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 60 →
Deafness with congenital onychodystrophy Periodic paralysis
1 gene
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TBC1D24(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 90 →
Doors syndrome Periodic paralysis
1 gene
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1 of 1 corroborated by 2+ sources
TBC1D24(4)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 90 →
Peripheral pulmonary artery stenosis Syndactyly of the toes
1 gene
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CUL9(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Pituitary adenoma Pituitary gigantism
1 gene
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1 of 1 corroborated by 2+ sources
AIP(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 82 →
Polycystic kidney disease with tuberous sclerosis Renovascular hypertension
1 gene
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1 of 1 corroborated by 2+ sources
PKD1(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 70 →
Polycystic kidneys, severe infantile with tuberous sclerosis Renovascular hypertension
1 gene
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PKD1(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 70 →
Polymyalgia rheumatica Porphyruria
1 gene
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HFE(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 196 →
Medullary carcinoma Primary hypertrophic osteoarthropathy
1 gene
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1 of 1 corroborated by 2+ sources
HPGD(6)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Infantile liver failure Verloes-bourguignon syndrome
1 gene
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SCYL1(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Deafness with congenital onychodystrophy Infantile myoclonic epilepsy
1 gene
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TBC1D24(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 90 →
Doors syndrome Infantile myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
TBC1D24(4)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 90 →
Infantile myoclonic epilepsy Periodic paralysis
1 gene
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TBC1D24(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 90 →
Intellectual developmental disorder seizures extrapyramidal Vulto-van silfhout-de vries syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DEAF1(5)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Interleukin 1 receptor antagonist deficiency Recurrent multifocal osteomyelitis
1 gene
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1 of 1 corroborated by 2+ sources
IL1RN(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 216 →
Intermittent hydrarthrosis Sweet syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MEFV(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Aphasia Intracranial embolism and thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
PLAT(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.