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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Capillary infantile hemangioma lymphatic malformation 1
1 gene
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1 of 1 corroborated by 2+ sources
FLT4(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Capillary malformation Clapo syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CA(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Capillary malformation Cloves syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CA(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Carasil syndrome Cerebral arteriopathy with subcortical infarcts and leukoencephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
HTRA1(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Carnevale syndrome De la chapelle dysplasia
1 gene
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SLC26A2(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Carpenter syndrome RAB23-related Carpenter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAB23(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Carpenter syndrome MEGF8-related Carpenter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MEGF8(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Carvajal syndrome Right ventricular cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
DSP(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 201 →
Castleman disease Intracranial arteriovenous malformation
1 gene
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1 of 1 corroborated by 2+ sources
IL6(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 126 →
Cataract-alopecia-sclerodactyly syndrome Perniola krajewska carnevale syndrome
1 gene
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LSS(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 362 →
Cataract-multisystem syndrome Dkc1-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
DKC1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 64 →
Cataract-multisystem syndrome dyskeratosis congenita, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
DKC1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 64 →
Thiamine-responsive megaloblastic anemia Venous hypertension
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A2(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 37 →
Alpha thalassemia x-linked intellectual disability Thoracic disease
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 122 →
Atr-x syndrome Thoracic disease
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 122 →
Thoracic disease X-linked alpha-thalassemia-intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 122 →
Three-vessel coronary artery disease Upshaw-schulman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 314 →
Cerebral sinovenous thrombosis thrombophilia due to activated protein c resistance
1 gene
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1 of 1 corroborated by 2+ sources
F5(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
thrombophilia due to activated protein c resistance Venous hypertension
1 gene
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1 of 1 corroborated by 2+ sources
F5(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 37 →
thrombophilia, X-linked, due to factor 9 defect Warfarin sensitivity
1 gene
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1 of 1 corroborated by 2+ sources
F9(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Tibial hemimelia White sutton syndrome
1 gene
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GLI3(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 142 →
Mandibuloacral dysostosis Tight skin contracture syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 65 →
Torg-winchester syndrome Winchester syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MMP14(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
dilated cardiomyopathy 1E Torsades de pointes
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 129 →
SCN5A-related cardiac rhythm disorder Torsades de pointes
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 129 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.