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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
autosomal recessive polycystic kidney disease Periportal fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
PKHD1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 157 →
Avascular necrosis of femoral head Collagenopathy
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 11 →
Avascular necrosis of femoral head Coxa plana
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 11 →
Avascular necrosis of femoral head Czech dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 11 →
Avascular necrosis of femoral head Dysspondyloenchondromatosis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 11 →
Avascular necrosis of femoral head kniest dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 11 →
Ayazi syndrome Deafness, nonsyndromic sensorineural, mitochondrial
1 gene
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POU3F4(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 251 →
Ayazi syndrome Hearing loss with stapes fixation
1 gene
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1 of 1 corroborated by 2+ sources
POU3F4(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Bart-pumphrey syndrome Keratitis-ichthyosis-deafness syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJB2(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Becker muscular dystrophy Benign congenital myopathy
1 gene
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1 of 1 corroborated by 2+ sources
DMD(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 213 →
Becker muscular dystrophy Dystrophinopathy
1 gene
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1 of 1 corroborated by 2+ sources
DMD(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 213 →
Becker muscular dystrophy progressive muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
DMD(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 213 →
Beemer-langer syndrome Thoracic disease
1 gene
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1 of 1 corroborated by 2+ sources
IFT80(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Benign fasciculation-cramp syndrome Episodic pain syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRPA1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Benign paroxysmal torticollis of infancy Bulbar palsy
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1A(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 61 →
Bent bone dysplasia Campomelic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 310 →
Bent bone dysplasia Camptomelic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 310 →
Bent bone dysplasia Cooks syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 310 →
Bent bone dysplasia isolated Pierre-Robin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX9(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 310 →
Ankylosis Bent bone dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FGFR2(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Beta-hexosaminidase a deficiency Tay-sachs disease
1 gene
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1 of 1 corroborated by 2+ sources
HEXA(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Beta-hydroxyisobutyryl-coa deacylase deficiency X-linked hereditary sensory and autonomic neuropathy with deafness
1 gene
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1 of 1 corroborated by 2+ sources
AIFM1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Bietti crystalline corneoretinal dystrophy Congenital prekallikrein deficiency
1 gene
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1 of 1 corroborated by 2+ sources
KLKB1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Bietti crystalline corneoretinal dystrophy inherited prekallikrein deficiency
1 gene
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1 of 1 corroborated by 2+ sources
KLKB1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Bilateral frontoparietal polymicrogyria Bilateral perisylvian polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
ADGRG1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 267 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.