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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hyperthyroxinemia Senile systemic amyloidosis
1 gene
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1 of 1 corroborated by 2+ sources
TTR(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 182 →
Hyperthyroxinemia Transthyretin amyloid cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
TTR(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 182 →
Hyperthyroxinemia Wild-type transthyretin-related amyloidosis
1 gene
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1 of 1 corroborated by 2+ sources
TTR(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 182 →
Hyperthyroxinemia obsolete hereditary ATTR amyloidosis
1 gene
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1 of 1 corroborated by 2+ sources
TTR(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 182 →
Hypocalcemic vitamin d-dependent rickets Peptic esophagitis
1 gene
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1 of 1 corroborated by 2+ sources
VDR(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 396 →
Hypocalciuric hypercalcemia neonatal severe primary hyperparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
CASR(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
hypoplasminogenemia Leukocyte disorders
1 gene
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1 of 1 corroborated by 2+ sources
PLG(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 155 →
ichthyosiform erythroderma, corneal involvement, and hearing loss Keratitis-ichthyosis-deafness syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AP1B1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 210 →
Arginine-glycine amidinotransferase deficiency Cerebral creatine deficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATM(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
arrhythmogenic cardiomyopathy with wooly hair and keratoderma Right ventricular cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
DSP(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 201 →
Arterial tortuosity syndrome cutis laxa, autosomal recessive, type 1B
1 gene
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1 of 1 corroborated by 2+ sources
EFEMP2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 66 →
Arthrogryposis-renal dysfunction-cholestasis syndrome Congenital pectus carinatum
1 gene
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FBN1(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 52 →
Arthrogryposis-renal dysfunction-cholestasis syndrome Coronary artery dissection
1 gene
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FBN1(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 52 →
17q23.1q23.2 microdeletion syndrome Arthropathy
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 24 →
Amelia Arthropathy
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 24 →
Arthropathy Chromosome 17q23.1-q23.2 duplication syndrome
1 gene
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TBX4(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 24 →
Arthropathy Coxopodopatellar syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 24 →
Arthropathy Ischiocoxopodopatellar syndrome with pulmonary arterial hypertension
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 24 →
asphyxiating thoracic dystrophy 2 Thoracic disease
1 gene
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1 of 1 corroborated by 2+ sources
IFT80(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Asthenozoospermia quebec platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLAU(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 123 →
Asymmetric crying face association Bor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EYA1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 145 →
Ataxia with vitamin e deficiency hypercholesterolemia, autosomal dominant, type B
1 gene
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1 of 1 corroborated by 2+ sources
APOB(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 140 →
Ataxia with vitamin e deficiency Vitamin e deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TTPA(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 140 →
Ataxia, combined cerebellar and peripheral, with hearing loss and diabetes mellitus Juvenile-onset diabetes mellitus-central and peripheral neurodegeneration syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC3(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
ATM-related cancer predisposition Chromosome 17q21.31 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATM(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 348 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.