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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
hearing loss, X-linked 6 X-linked diffuse leiomyomatosis with alport syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL4A6(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 49 →
Heerfordt syndrome Thromboangiitis obliterans
1 gene
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0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 1 →
Hemimelia of limb Proximal symphalangism
1 gene
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1 of 1 corroborated by 2+ sources
NOG(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Hemimelia of limb NOG-related symphalangism spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
NOG(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Hemimelia of limb Zygodactyly
1 gene
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1 of 1 corroborated by 2+ sources
HOXD13(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 397 →
hemochromatosis type 1 Polymyalgia rheumatica
1 gene
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1 of 1 corroborated by 2+ sources
HFE(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 196 →
hemochromatosis type 1 Porphyruria
1 gene
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1 of 1 corroborated by 2+ sources
HFE(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 196 →
hemochromatosis type 5 Vitreoretinochoroidopathy
1 gene
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1 of 1 corroborated by 2+ sources
FTH1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Hemoglobin lepore beta thalassemia Lepore-beta-thalassemia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HBD(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Hemophilia b thrombophilia due to thrombin defect
1 gene
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1 of 1 corroborated by 2+ sources
F2(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 388 →
Hemophilia b Hemophilia b carriers
1 gene
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1 of 1 corroborated by 2+ sources
F9(7)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Hemophilia b thrombophilia, X-linked, due to factor 9 defect
1 gene
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1 of 1 corroborated by 2+ sources
F9(7)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Hereditary angiopathy with nephropathy, aneurysms, and muscle cramps Retinal arterial tortuosity
1 gene
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1 of 1 corroborated by 2+ sources
COL4A1(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 154 →
Hereditary angiopathy with nephropathy, aneurysms, and muscle cramps Simpson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KAT6B(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Hereditary folate malabsorption Malabsorption syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC46A1(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 411 →
hereditary hyperferritinemia with congenital cataracts Hyperferritinemia
1 gene
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1 of 1 corroborated by 2+ sources
FTL(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
hereditary spastic paraplegia 8 Stress urinary incontinence
1 gene
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1 of 1 corroborated by 2+ sources
WASHC5(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 188 →
hereditary thrombocytopenia and hematologic cancer predisposition syndrome Transient myeloproliferative disorder
1 gene
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1 of 1 corroborated by 2+ sources
RUNX1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 125 →
hermansky-pudlak syndrome 10 X-linked ocular abinism
1 gene
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1 of 1 corroborated by 2+ sources
AP3D1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 414 →
holoprosencephaly 3 Triphalangeal thumb-polysyndactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SHH(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 232 →
homocystinuria due to methylene tetrahydrofolate reductase deficiency Mitral valve disease
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
homocystinuria due to methylene tetrahydrofolate reductase deficiency Rheumatic disease of mitral valve
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
homocystinuria due to methylene tetrahydrofolate reductase deficiency Rheumatic mitral regurgitation
1 gene
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1 of 1 corroborated by 2+ sources
MTHFR(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Hyper-igd syndrome Mevalonate kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MVK(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 316 →
hypercholesterolemia, autosomal dominant, type B Isolated systolic hypertension
1 gene
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1 of 1 corroborated by 2+ sources
APOB(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 140 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.