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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
beta-thalassemia HBB/LCRB Hemoglobin c disease
1 gene
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1 of 1 corroborated by 2+ sources
HBB(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 19 →
beta-thalassemia HBB/LCRB Hemoglobin c beta thalassemia
1 gene
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1 of 1 corroborated by 2+ sources
HBB(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 19 →
beta-thalassemia HBB/LCRB Hemoglobin d disease
1 gene
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1 of 1 corroborated by 2+ sources
HBB(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 19 →
Beta2-microglobulinic amyloidosis Hypergammaglobulinemia
1 gene
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1 of 1 corroborated by 2+ sources
B2M(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 228 →
Beta2-microglobulinic amyloidosis hypoproteinemia, hypercatabolic
1 gene
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1 of 1 corroborated by 2+ sources
B2M(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 228 →
Bifid nail OFD1-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
OFD1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Bilateral congenital mydriasis spinocerebellar ataxia type 29
1 gene
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1 of 1 corroborated by 2+ sources
ITPR1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 74 →
Bilateral congenital vertical talus Vertical talus
1 gene
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1 of 1 corroborated by 2+ sources
HOXD10(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Cataract-neurodevelopmental syndrome Peroxisomal fatty acyl-coa reductase 1 disorder
1 gene
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1 of 1 corroborated by 2+ sources
FAR1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Cataract-neurodevelopmental syndrome fatty acyl-CoA reductase 1 upregulation
1 gene
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1 of 1 corroborated by 2+ sources
FAR1(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Cataract-neurodevelopmental syndrome fatty acyl-CoA reductase 1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
FAR1(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Cathepsin a-related arteriopathy, strokes, and leukoencephalopathy Combined deficiency of sialidase and beta galactosidase
1 gene
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1 of 1 corroborated by 2+ sources
CTSA(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Catshl syndrome Crouzon syndrome with acanthosis nigricans
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(7)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
Catshl syndrome Muenke syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
Catshl syndrome Thanatophoric dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(7)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
Caudal duplication anomaly Craniometadiaphyseal osteosclerosis with hip dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
AXIN1(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Caudate atrophy Nasu-hakola disease
1 gene
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1 of 1 corroborated by 2+ sources
TYROBP(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 333 →
Caveolinopathy Creatine phosphokinase elevation
1 gene
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1 of 1 corroborated by 2+ sources
CAV3(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 217 →
Cednik syndrome Cerebral dysgenesis-neuropathy-ichthyosis-palmoplantar keratoderma syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SNAP29(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Central apnea Neonatal encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
MECP2(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 61 →
Central core disease Congenital multicore myopathy with external ophthalmoplegia
1 gene
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1 of 1 corroborated by 2+ sources
RYR1(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 326 →
Central core disease RYR1-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
RYR1(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 326 →
Central hypothyroidism Neurooculorenal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ROBO1(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Central retinal vein occlusion hereditary thrombophilia due to congenital protein C deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PROC(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 314 →
Cerebellar ataxia with deafness and narcolepsy Cerebellar ataxia, deafness, and narcolepsy
1 gene
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1 of 1 corroborated by 2+ sources
DNMT1(7)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.