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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Arthritis Autoimmune interstitial lung disease-arthritis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COPA(5)
0.036 0.500 3.37e-3 4.37e-3 ✓ sig. —
Interstitial lung disease Laryngo-onycho-cutaneous syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LAMA3(5)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Interstitial lung disease isovaleric acidemia
1 gene
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1 of 1 corroborated by 2+ sources
IVD(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Interstitial lung disease primary ciliary dyskinesia 28
1 gene
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1 of 1 corroborated by 2+ sources
SPAG1(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Interstitial lung disease Respiratory distress with surfactant metabolism deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(5)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Interstitial lung disease SFTPC-related interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(5)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Interstitial lung disease interstitial lung disease 2
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA2(5)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Interstitial lung disease interstitial lung disease 1
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(5)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
hermansky-pudlak syndrome 7 Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
DTNBP1(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
hermansky-pudlak syndrome 4 Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
HPS4(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Cavitary optic disc anomalies Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
MMP19(3)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Brain calcification Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
FARSB(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Autoimmune interstitial lung disease-arthritis syndrome Autoinflammatory syndrome
1 gene
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NLRP12(1)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —
Idiopathic pulmonary fibrosis interstitial lung disease 1
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(3)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Idiopathic pulmonary fibrosis interstitial lung disease 2
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA2(5)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Anemia epidermolysis bullosa, junctional 7, with interstitial lung disease and nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ITGA3(2)
0.012 1.000 5.46e-3 6.63e-3 ✓ sig. —
Anemia Congenital nephrotic syndrome, interstitial lung disease, epidermolysis bullosa syndrome
1 gene
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ITGA3(1)
0.012 1.000 5.46e-3 6.63e-3 ✓ sig. —
interstitial lung disease 1 Obstructive airway disease
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(2)
0.010 1.000 6.49e-3 7.75e-3 ✓ sig. —
Autoimmune interstitial lung disease-arthritis syndrome Bell's palsy
1 gene
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1 of 1 corroborated by 2+ sources
NLRP12(2)
0.017 0.500 7.26e-3 8.57e-3 ✓ sig. —
Chromosome 16p11.2 deletion syndrome Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(5)
0.015 0.500 8.55e-3 9.90e-3 ✓ sig. —
Cerebellar, ocular, craniofacial, and genital syndrome Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
NBEA(2)
0.015 0.500 8.55e-3 9.90e-3 ✓ sig. —
inherited interstitial lung disease Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
LAMP3(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. Cluster 2 →
Bipolar disorder inherited interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
LAMP3(2)
0.001 1.000 7.92e-2 8.03e-2 Cluster 2 →

Showing 23 of 48 matching pairs, sorted by significance (ascending). Click a column header to sort.