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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cronkhite-canada syndrome Tibial hemimelia
1 gene
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GLI3(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 142 →
Cronkhite-canada syndrome greig cephalopolysyndactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLI3(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 142 →
Crouzon syndrome with acanthosis nigricans Muenke syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(7)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
Crouzon syndrome with acanthosis nigricans Thanatophoric dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(7)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
Cryptogenic multifocal ulcerous stenosing enteritis Cytosolic phospholipase-a2 alpha deficiency associated bleeding disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G4A(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 265 →
Cryptophthalmia Cryptotria
1 gene
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1 of 1 corroborated by 2+ sources
FREM2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
CTNNB1-related neurodevelopmental disorder and/or vitreoretinopathy Intellectual developmental disorder dysmorphic ocular microcephaly peripheral
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 104 →
Culler-jones syndrome Postaxial polydactyly–anterior pituitary anomalies–facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLI2(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 212 →
Curry-jones syndrome Winter shortland temple syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMO(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 292 →
Curry-jones syndrome mosaic SMO syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMO(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 292 →
Cutis marmorata immunodeficiency 78 with autoimmunity and developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
TPP2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Cystic kidney disease with ventriculomegaly Ventriculomegaly with cystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Cystic kidney disease with ventriculomegaly focal segmental glomerulosclerosis 9
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Czech dysplasia Dysspondyloenchondromatosis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 11 →
Czech dysplasia kniest dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 11 →
Czech dysplasia spondyloperipheral dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 11 →
D-lactic aciduria D-lactic aciduria with gout
1 gene
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1 of 1 corroborated by 2+ sources
LDHD(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Dacryocystitis Sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
IL1RN(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 216 →
De barsy syndrome P5CS deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
De la chapelle dysplasia Diastrophic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A2(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 183 →
De la chapelle dysplasia Diastrophic dysplasia, broad bone-platyspondylic variant
1 gene
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SLC26A2(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 183 →
De la chapelle dysplasia Ear disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 183 →
De la chapelle dysplasia SLC26A2-related skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 183 →
Deaf blind hypopigmentation syndrome Yemenite deaf-blind hypopigmentation syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Deaf blind hypopigmentation syndrome Waardenburg syndrome type 4C
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.