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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Corpus callosum agenesis with abnormal genitalia X-linked spasticity-intellectual disability-epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ARX(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 259 →
Corpus callosum agenesis with intellectual disability, coloboma, micrognathia Corpus callosum agenesis with intellectual disability, ocular coloboma, micrognathia
1 gene
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1 of 1 corroborated by 2+ sources
IGBP1(7)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Cortical dysgenesis with pontocerebellar hypoplasia TUBB3-related tubulinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TUBB3(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Corticosterone methyl oxidase type i Corticosterone monooxygenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP11B2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 276 →
Corticosterone methyl oxidase type i Corticosterone methyloxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP11B2(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 276 →
Corticosterone methyl oxidase type i Familial hypoaldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
CYP11B2(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 276 →
Corticosterone methyl oxidase type i Hyperreninemic hypoaldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
CYP11B2(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 276 →
Corticosterone methyloxidase deficiency Corticosterone monooxygenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP11B2(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 276 →
Corticosterone methyloxidase deficiency Familial hypoaldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
CYP11B2(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 276 →
Corticosterone methyloxidase deficiency Hyperreninemic hypoaldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
CYP11B2(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 276 →
Corticosterone monooxygenase deficiency Familial hypoaldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
CYP11B2(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 276 →
Corticosterone monooxygenase deficiency Hyperreninemic hypoaldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
CYP11B2(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 276 →
Costeff optic atrophy syndrome optic atrophy 3
1 gene
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1 of 1 corroborated by 2+ sources
OPA3(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Cousin syndrome Pelviscapular dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
TBX15(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Coxa plana Czech dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 11 →
Coxa plana Dysspondyloenchondromatosis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 11 →
Coxa plana kniest dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 11 →
Coxa plana spondyloperipheral dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 11 →
Coxopodopatellar syndrome Ischiocoxopodopatellar syndrome with pulmonary arterial hypertension
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 24 →
Craniocerebral trauma Hereditary antithrombin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 197 →
Cranioosteoarthropathy Digital clubbing, isolated congenital
1 gene
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1 of 1 corroborated by 2+ sources
HPGD(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
craniosynostosis 6 Turricephaly
1 gene
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1 of 1 corroborated by 2+ sources
ZIC1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Creatine transporter deficiency X-linked creatine transporter deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A8(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 358 →
Cria syndrome Immune dysregulation-inflammatory bowel disease-arthritis-recurrent infection-lymphopenia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIPK1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 264 →
Cria syndrome immunodeficiency 57
1 gene
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1 of 1 corroborated by 2+ sources
RIPK1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 264 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.