Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Pseudohypoaldosteronism Rolandic epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
NR3C2(4)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Rolandic epilepsy self-limited familial neonatal epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
KCNQ3(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Central nervous system malformation Progressive myoclonic epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
LMNB2(5)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. —
Lafora disease Progressive myoclonic epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
NHLRC1(4)
0.038 0.500 3.11e-3 4.10e-3 ✓ sig. Cluster 329 →
Amish infantile epilepsy syndrome Hashimoto disease
1 gene
Show details
1 of 1 corroborated by 2+ sources
ATXN2(2)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Childhood absence epilepsy Synovial disorder
1 gene
Show details
1 of 1 corroborated by 2+ sources
GABRB3(4)
0.063 0.167 3.89e-3 4.94e-3 ✓ sig. Cluster 47 →
Aortic aneurysm neonatal/infantile epilepsy syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
KCNH5(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. Cluster 12 →
Conotruncal cardiac defect neonatal/infantile epilepsy syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
KCNH5(2)
0.016 1.000 4.09e-3 5.16e-3 ✓ sig. —
Axonal neuropathy Generalized epilepsy
1 gene
Show details
GBF1(1)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Casgid syndrome Generalized epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
GLS(2)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
exostoses, multiple, type 1 Generalized epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
EXT1(2)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Generalized epilepsy Glutaminase deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
GLS(4)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Generalized epilepsy hermansky-pudlak syndrome 4
1 gene
Show details
1 of 1 corroborated by 2+ sources
HPS4(2)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Generalized epilepsy infantile cataract, skin abnormalities, glutamate excess, and impaired intellectual development
1 gene
Show details
1 of 1 corroborated by 2+ sources
GLS(2)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Congenital cerebellar ataxia Temporal lobe epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
GRM1(3)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
Lymphatic system disease Temporal lobe epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
SLC12A2(3)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
Early-onset spastic ataxia-myoclonic epilepsy-neuropathy syndrome Spastic ataxia
1 gene
Show details
1 of 1 corroborated by 2+ sources
AFG3L2(6)
0.014 1.000 4.55e-3 5.67e-3 ✓ sig. —
Complex regional pain syndrome Nocturnal frontal lobe epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
SPAG1(2)
0.059 0.125 4.67e-3 5.79e-3 ✓ sig. —
Benign adult familial myoclonic epilepsy Myoclonic epilepsy
1 gene
Show details
1 of 1 corroborated by 2+ sources
SAMD12(2)
0.037 0.333 4.67e-3 5.79e-3 ✓ sig. —
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Duplication 15q11-q13 syndrome
1 gene
Show details
AUTS2(1)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Ocular anomalies with axonal neuropathy and developmental delay
1 gene
Show details
1 of 1 corroborated by 2+ sources
ATAD3A(2)
0.026 0.500 4.67e-3 5.79e-3 ✓ sig. —
Female restricted epilepsy with intellectual disability X-linked intellectual disability
1 gene
Show details
PCDH19(1)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Hyperekplexia epilepsy syndrome X-linked intellectual disability
1 gene
Show details
1 of 1 corroborated by 2+ sources
ARHGEF9(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 115 →
Epilepsy due to perinatal stroke Intellectual disability
1 gene
Show details
ST3GAL3(1)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —
Hyperekplexia epilepsy syndrome Hypogonadism
1 gene
Show details
1 of 1 corroborated by 2+ sources
ARHGEF9(3)
0.013 1.000 4.94e-3 6.05e-3 ✓ sig. —

Showing 25 of 420 matching pairs, sorted by significance (ascending). Click a column header to sort.