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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hereditary neuropathy with liability to pressure palsies Myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
PMP22(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Juvenile absence epilepsy Myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
EFHC1(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 47 →
Juvenile myoclonic epilepsy Myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CILK1(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Juvenile myoclonic epilepsy Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CILK1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
myasthenic syndrome, congenital, 1b, fast-channel Myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Myoclonus-renal failure syndrome Progressive myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SCARB2(6)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 329 →
Myoclonic epilepsy neurodegeneration, childhood-onset, with cerebellar ataxia and cognitive decline
1 gene
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1 of 1 corroborated by 2+ sources
CAPRIN1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Myoclonic epilepsy neurodevelopmental disorder with language impairment, autism, and attention deficit-hyperactivity disorder
1 gene
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1 of 1 corroborated by 2+ sources
CAPRIN1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Progressive myoclonic epilepsy Progressive myoclonic epilepsy with renal failure
1 gene
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1 of 1 corroborated by 2+ sources
SEMA6B(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 329 →
Myoclonic epilepsy self-limited familial neonatal epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
KCNQ3(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Bronchus cancer Frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA4(3)
0.100 0.200 1.62e-3 2.46e-3 ✓ sig. —
Complex partial epilepsy Polymicrogyria
1 gene
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1 of 1 corroborated by 2+ sources
SCN3A(2)
0.038 1.000 1.62e-3 2.46e-3 ✓ sig. —
Cortical dysplasia-focal epilepsy syndrome Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 179 →
Focal epilepsy with speech disorder and impaired intellectual development Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2A(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Congenital ocular coloboma Juvenile myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CILK1(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Childhood-onset epilepsy syndrome Nocturnal frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
KCNT1(6)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. Cluster 273 →
Childhood-onset epilepsy syndrome Epilepsy of infancy with migrating focal seizures
1 gene
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1 of 1 corroborated by 2+ sources
KCNT1(3)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Childhood-onset epilepsy syndrome Malignant migrating partial seizures of infancy
1 gene
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1 of 1 corroborated by 2+ sources
KCNT1(2)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
progressive myoclonus epilepsy Right atrial isomerism
1 gene
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1 of 1 corroborated by 2+ sources
CERS1(2)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Aneurysm neonatal/infantile epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNH5(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 12 →
Focal onset epileptic seizure Frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CHRNB2(2)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. Cluster 273 →
Early onset vitamin b6 dependent epilepsy Myelomonocytic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
CBL(5)
0.077 0.333 1.95e-3 2.83e-3 ✓ sig. —
Developmental delay with or without epilepsy West syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPTAN1(3)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. —
Epilepsy due to perinatal stroke West syndrome
1 gene
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ST3GAL3(1)
0.032 1.000 1.95e-3 2.83e-3 ✓ sig. Cluster 328 →
Developmental delay with or without epilepsy Distal spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
SPTAN1(3)
0.031 1.000 2.01e-3 2.90e-3 ✓ sig. —

Showing 25 of 420 matching pairs, sorted by significance (ascending). Click a column header to sort.