Pathways column key: KEGG Reactome

Disease Term	Disease ID	Gene Symbol	Classification	References	Source	Pathways
BREAST CANCER	MONDO_0007254 114480	CD34	Unknown	29059683	GWAS catalog	Cell adhesion molecules Hematopoietic cell lineage Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
		CD46	Unknown	29059683	GWAS catalog	Virion - Ebolavirus, Lyssavirus and Morbillivirus Virion - Adenovirus Complement and coagulation cascades +2 more
		CD9	Unknown	35121771	GWAS catalog	Virion - Hepatitis viruses Hematopoietic cell lineage Platelet degranulation +2 more
		CDC14A	Unknown	29059683	GWAS catalog	Cell cycle Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase MAPK6/MAPK4 signaling
		CDCA7	Unknown	23535729 25751625 29059683 32139696 36819030	GWAS catalog	—
		CDCA7L	Unknown	29059683 32139696	GWAS catalog	—
		CDH1	Unknown	—	HPO	Rap1 signaling pathway Apelin signaling pathway Hippo signaling pathway +15 more
		CDH12	Unknown	29059683	GWAS catalog	Adherens junctions interactions
		CDH23	Unknown	38538606	GWAS catalog	—
		CDH8	Unknown	35121771	GWAS catalog	Adherens junctions interactions
		CDKAL1	Unknown	29059683 32139696	GWAS catalog	tRNA modification in the nucleus and cytosol
		CDKN1A	Unknown	29059683 37340002	GWAS catalog	Endocrine resistance Platinum drug resistance ErbB signaling pathway +56 more
		CDKN2B	Unknown	32139696 36819030	GWAS catalog	FoxO signaling pathway Cell cycle Cellular senescence +12 more
		CDKN2C	Unknown	29059683 37380357	GWAS catalog	Endocrine resistance Cell cycle Cushing syndrome +6 more
		CDYL2	Unknown	23535729 25751625 29059683 32139696 32887889 34290314 37340002 38538606	GWAS catalog	—
		CELF4	Unknown	40229280	GWAS catalog	—
		CEP120	Unknown	29059683 37340002	GWAS catalog	—
		CEP131	Unknown	34981446	GWAS catalog	Regulation of PLK1 Activity at G2/M Transition Loss of Nlp from mitotic centrosomes Recruitment of mitotic centrosome proteins and complexes +4 more
		CEP162	Unknown	29059683	GWAS catalog	Anchoring of the basal body to the plasma membrane
		CEP192	Unknown	29059683	GWAS catalog	Regulation of PLK1 Activity at G2/M Transition Loss of Nlp from mitotic centrosomes Recruitment of mitotic centrosome proteins and complexes +4 more
		CES5A	Unknown	40229280	GWAS catalog	—
		CFL1	Unknown	23535729 25751625 29059683 32139696	GWAS catalog	Axon guidance Fc gamma R-mediated phagocytosis Regulation of actin cytoskeleton +3 more
		CFLAR	Unknown	29059683	GWAS catalog	NF-kappa B signaling pathway Autophagy - animal Apoptosis +9 more
		CHEK2	Unknown	25751625 29059683 32887889 34737426 38538606	GWAS catalog	Cell cycle p53 signaling pathway Cellular senescence +9 more
		CHI3L2	Unknown	38254997	GWAS catalog	—
		CHRNB1	Unknown	37340002	GWAS catalog	Neuroactive ligand-receptor interaction
		CHST9	Unknown	23535729 25751625 29059683 32139696 34594039 37340002 38538606	GWAS catalog	Various types of N-glycan biosynthesis Metabolic pathways Chondroitin sulfate biosynthesis
		CITED4	Unknown	29059683 32139696	GWAS catalog	Activation of the TFAP2 (AP-2) family of transcription factors
		CLEC18B	Unknown	18463975	GWAS catalog	—
		CLK1	Unknown	29059683	GWAS catalog	Legionellosis
		CLMP	Unknown	29059683 37340002	GWAS catalog	—
		CMC1	Unknown	29059683	GWAS catalog	—
		CMSS1	Unknown	29059683 32139696 32887889	GWAS catalog	—
		CNTD1	Unknown	29059683	GWAS catalog	—
		CNTNAP1	Unknown	29059683	GWAS catalog	Cell adhesion molecules
		COA8	Unknown	29059683	GWAS catalog	—
		COL14A1	Unknown	29059683	GWAS catalog	Protein digestion and absorption Collagen biosynthesis and modifying enzymes Assembly of collagen fibrils and other multimeric structures +1 more
		COL1A1	Unknown	17903305	GWAS catalog	PI3K-Akt signaling pathway Focal adhesion ECM-receptor interaction +26 more
		COL1A2	Unknown	29059683 32139696	GWAS catalog	PI3K-Akt signaling pathway Focal adhesion ECM-receptor interaction +27 more
		COL5A2	Unknown	29059683	GWAS catalog	Cytoskeleton in muscle cells Protein digestion and absorption Collagen degradation +10 more
		COL8A1	Unknown	29059683	GWAS catalog	Protein digestion and absorption Collagen degradation Collagen biosynthesis and modifying enzymes +3 more
		COX6A1	Unknown	29059683 32139696	GWAS catalog	Oxidative phosphorylation Metabolic pathways Cardiac muscle contraction +12 more
		CPEB3	Unknown	29059683 37380357	GWAS catalog	Oocyte meiosis Progesterone-mediated oocyte maturation
		CPNE5	Unknown	29059683	GWAS catalog	—
		CREB5	Unknown	29059683 32139696	GWAS catalog	cGMP-PKG signaling pathway cAMP signaling pathway PI3K-Akt signaling pathway +31 more
		CRHR1	Unknown	36819030	GWAS catalog	cAMP signaling pathway Neuroactive ligand-receptor interaction Hormone signaling +5 more
		CRYL1	Unknown	38538606	GWAS catalog	Pentose and glucuronate interconversions Metabolic pathways Formation of xylulose-5-phosphate
		CRYZL2P-SEC16B	Unknown	29059683	GWAS catalog	—
		CTNNA1	Unknown	38538606	GWAS catalog	Hippo signaling pathway Adherens junction Leukocyte transendothelial migration +9 more
		CTNNA2	Unknown	25824743 38538606	GWAS catalog	Hippo signaling pathway Adherens junction Leukocyte transendothelial migration +6 more
BREAST CARCINOMA	EFO_0000305	CD34	Unknown	29059683	GWAS catalog	Cell adhesion molecules Hematopoietic cell lineage Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
		CD46	Unknown	29059683	GWAS catalog	Virion - Ebolavirus, Lyssavirus and Morbillivirus Virion - Adenovirus Complement and coagulation cascades +2 more
		CD9	Unknown	35121771	GWAS catalog	Virion - Hepatitis viruses Hematopoietic cell lineage Platelet degranulation +2 more
		CDC14A	Unknown	29059683	GWAS catalog	Cell cycle Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase MAPK6/MAPK4 signaling
		CDCA7	Unknown	23535729 25751625 29059683 32139696 32887889	GWAS catalog	—
		CDCA7L	Unknown	29059683 32139696	GWAS catalog	—
		CDH12	Unknown	29059683	GWAS catalog	Adherens junctions interactions
		CDH23	Unknown	38538606	GWAS catalog	—
		CDH8	Unknown	35121771	GWAS catalog	Adherens junctions interactions
		CDKAL1	Unknown	29059683 32139696	GWAS catalog	tRNA modification in the nucleus and cytosol
		CDKN1A	Unknown	29059683 35803233 37340002	GWAS catalog	Endocrine resistance Platinum drug resistance ErbB signaling pathway +56 more
		CDKN2B	Unknown	32139696	GWAS catalog	FoxO signaling pathway Cell cycle Cellular senescence +12 more
		CDKN2C	Unknown	29059683	GWAS catalog	Endocrine resistance Cell cycle Cushing syndrome +6 more
		CDYL2	Unknown	23535729 25751625 29059683 32139696 32887889 34290314 37340002 38538606	GWAS catalog	—
		CELF4	Unknown	40229280	GWAS catalog	—
		CEP120	Unknown	29059683 37340002	GWAS catalog	—
		CEP131	Unknown	34981446	GWAS catalog	Regulation of PLK1 Activity at G2/M Transition Loss of Nlp from mitotic centrosomes Recruitment of mitotic centrosome proteins and complexes +4 more
		CEP162	Unknown	29059683	GWAS catalog	Anchoring of the basal body to the plasma membrane
		CEP192	Unknown	29059683	GWAS catalog	Regulation of PLK1 Activity at G2/M Transition Loss of Nlp from mitotic centrosomes Recruitment of mitotic centrosome proteins and complexes +4 more
		CES5A	Unknown	40229280	GWAS catalog	—
		CFL1	Unknown	23535729 25751625 29059683 32139696	GWAS catalog	Axon guidance Fc gamma R-mediated phagocytosis Regulation of actin cytoskeleton +3 more
		CFLAR	Unknown	29059683	GWAS catalog	NF-kappa B signaling pathway Autophagy - animal Apoptosis +9 more
		CHI3L2	Unknown	38254997	GWAS catalog	—
		CHRNB1	Unknown	37340002	GWAS catalog	Neuroactive ligand-receptor interaction
		CHST9	Unknown	23535729 25751625 29059683 32139696 34594039 37340002 38538606	GWAS catalog	Various types of N-glycan biosynthesis Metabolic pathways Chondroitin sulfate biosynthesis
		CITED4	Unknown	29059683 32139696	GWAS catalog	Activation of the TFAP2 (AP-2) family of transcription factors
		CLEC18B	Unknown	18463975	GWAS catalog	—
		CLK1	Unknown	29059683 34290314	GWAS catalog	Legionellosis
		CLMP	Unknown	29059683 37340002	GWAS catalog	—
		CMC1	Unknown	29059683	GWAS catalog	—
		CMSS1	Unknown	29059683 32139696 32887889	GWAS catalog	—
		CNTD1	Unknown	29059683	GWAS catalog	—
		CNTNAP1	Unknown	29059683	GWAS catalog	Cell adhesion molecules
		COA8	Unknown	29059683	GWAS catalog	—
		COL14A1	Unknown	29059683	GWAS catalog	Protein digestion and absorption Collagen biosynthesis and modifying enzymes Assembly of collagen fibrils and other multimeric structures +1 more
		COL1A1	Unknown	17903305	GWAS catalog	PI3K-Akt signaling pathway Focal adhesion ECM-receptor interaction +26 more
		COL1A2	Unknown	29059683 32139696	GWAS catalog	PI3K-Akt signaling pathway Focal adhesion ECM-receptor interaction +27 more
		COL5A2	Unknown	29059683	GWAS catalog	Cytoskeleton in muscle cells Protein digestion and absorption Collagen degradation +10 more
		COL8A1	Unknown	29059683	GWAS catalog	Protein digestion and absorption Collagen degradation Collagen biosynthesis and modifying enzymes +3 more
		COX6A1	Unknown	29059683 32139696	GWAS catalog	Oxidative phosphorylation Metabolic pathways Cardiac muscle contraction +12 more
		CPEB3	Unknown	29059683	GWAS catalog	Oocyte meiosis Progesterone-mediated oocyte maturation
		CPNE5	Unknown	29059683	GWAS catalog	—
		CREB5	Unknown	29059683 32139696	GWAS catalog	cGMP-PKG signaling pathway cAMP signaling pathway PI3K-Akt signaling pathway +31 more
		CRYL1	Unknown	38538606	GWAS catalog	Pentose and glucuronate interconversions Metabolic pathways Formation of xylulose-5-phosphate
		CRYZL2P-SEC16B	Unknown	29059683	GWAS catalog	—
		CTNNA1	Unknown	38538606	GWAS catalog	Hippo signaling pathway Adherens junction Leukocyte transendothelial migration +9 more
		CTNNA2	Unknown	25824743 38538606	GWAS catalog	Hippo signaling pathway Adherens junction Leukocyte transendothelial migration +6 more
LUMINAL B BREAST CARCINOMA	MONDO_0021115	CDCA7	Unknown	38832928	GWAS catalog	—

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Breast cancer

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