Pathways column key: KEGG Reactome

Disease Term	Disease ID	Gene Symbol	Classification	References	Source	Pathways
BREAST CANCER	MONDO_0007254 114480	BCAS1	Unknown	29059683	GWAS catalog	—
		BCAS4	Unknown	29059683	GWAS catalog	—
		BCAT1	Unknown	31757997	GWAS catalog	Cysteine and methionine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis +6 more
		BCL2	Unknown	29059683	GWAS catalog	EGFR tyrosine kinase inhibitor resistance Endocrine resistance Platinum drug resistance +46 more
		BCL2L11	Unknown	29059683 32139696	GWAS catalog	EGFR tyrosine kinase inhibitor resistance FoxO signaling pathway PI3K-Akt signaling pathway +13 more
		BIN3	Unknown	29059683	GWAS catalog	—
		BLK	Unknown	37380357	GWAS catalog	B cell receptor signaling pathway RUNX1 regulates transcription of genes involved in BCR signaling
		BNC2	Unknown	36819030	GWAS catalog	—
		BPIFB1	Unknown	32887889	GWAS catalog	Antimicrobial peptides
		BRCA1	Unknown	—	HPO	Platinum drug resistance Homologous recombination Fanconi anemia pathway +19 more
		BRCA2	Unknown	23535729 23535733 25751625 29059683	GWAS catalog	Homologous recombination Fanconi anemia pathway Pathways in cancer +7 more
		BRD10	Unknown	29059683	GWAS catalog	—
		BRSK1	Unknown	29059683 40229280	GWAS catalog	—
		BTN2A1	Unknown	29059683	GWAS catalog	Butyrophilin (BTN) family interactions
		C16ORF82	Unknown	38538606	GWAS catalog	—
		C16ORF95	Unknown	38538606	GWAS catalog	—
		C19ORF12	Unknown	29058716	GWAS catalog	—
		C1QTNF6	Unknown	38501904	GWAS catalog	—
		C5ORF22	Unknown	40229280	GWAS catalog	—
		CAAP1	Unknown	40229280	GWAS catalog	—
		CABLES1	Unknown	25038754 29059683	GWAS catalog	Cyclin E associated events during G1/S transition Cyclin A:Cdk2-associated events at S phase entry
		CACFD1	Unknown	29059683	GWAS catalog	—
		CADM2	Unknown	29059683	GWAS catalog	Adherens junctions interactions
		CADPS2	Unknown	37380357	GWAS catalog	—
		CASP7	Unknown	29059683	GWAS catalog	Efferocytosis Apoptosis Apoptosis - multiple species +17 more
		CASP8	Unknown	29059683 32139696 32887889 34290314 34594039 36819030 37340002 38538606	GWAS catalog	Platinum drug resistance p53 signaling pathway Apoptosis +53 more
		CASTOR2	Unknown	32424353 34234117	GWAS catalog	mTOR signaling pathway Amino acids regulate mTORC1
		CASZ1	Unknown	29059683	GWAS catalog	—
		CATSPERB	Unknown	29059683	GWAS catalog	Sperm Motility And Taxes
		CAVIN1	Unknown	29059683	GWAS catalog	RNA Polymerase I Transcription Termination
		CBLN2	Unknown	38538606	GWAS catalog	—
		CBX8	Unknown	29059683	GWAS catalog	Polycomb repressive complex Oxidative Stress Induced Senescence SUMOylation of DNA damage response and repair proteins +5 more
		CCDC102B	Unknown	29059683	GWAS catalog	—
		CCDC134	Unknown	29059683	GWAS catalog	—
		CCDC171	Unknown	37851288	GWAS catalog	—
		CCDC30	Unknown	29059683	GWAS catalog	—
		CCDC33	Unknown	29059683	GWAS catalog	—
		CCDC57	Unknown	40229280	GWAS catalog	—
		CCDC87	Unknown	29059683	GWAS catalog	—
		CCDC88C	Unknown	23535729 25751625 29059683 32139696 32887889 34290314 36819030	GWAS catalog	Wnt signaling pathway
		CCDC91	Unknown	23535729 23535733 25751625 27117709 29059683 31757997 32139696 32514122 32887889 34290314 34594039 37340002 37380357 38538606	GWAS catalog	—
		CCL16	Unknown	34981446	GWAS catalog	Cytokine-cytokine receptor interaction Viral protein interaction with cytokine and cytokine receptor Chemokine signaling pathway +2 more
		CCL21	Unknown	34981446	GWAS catalog	Cytokine-cytokine receptor interaction Viral protein interaction with cytokine and cytokine receptor Chemokine signaling pathway +3 more
		CCL28	Unknown	29059683	GWAS catalog	Cytokine-cytokine receptor interaction Viral protein interaction with cytokine and cytokine receptor Chemokine signaling pathway +3 more
		CCND1	Unknown	29059683 32887889 34290314	GWAS catalog	Endocrine resistance FoxO signaling pathway Cell cycle +58 more
		CCNE1	Unknown	29058716	GWAS catalog	Cell cycle Oocyte meiosis p53 signaling pathway +24 more
		CCSER1	Unknown	29059683	GWAS catalog	—
		CD160	Unknown	29059683	GWAS catalog	Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
		CD180	Unknown	29059683	GWAS catalog	Toll Like Receptor 4 (TLR4) Cascade
		CD248	Unknown	29059683	GWAS catalog	—
BREAST CARCINOMA	EFO_0000305	BCAS1	Unknown	29059683	GWAS catalog	—
		BCAS4	Unknown	29059683	GWAS catalog	—
		BCAT1	Unknown	31757997	GWAS catalog	Cysteine and methionine metabolism Valine, leucine and isoleucine degradation Valine, leucine and isoleucine biosynthesis +6 more
		BCL2	Unknown	29059683	GWAS catalog	EGFR tyrosine kinase inhibitor resistance Endocrine resistance Platinum drug resistance +46 more
		BCL2L11	Unknown	27432226 29059683 32139696 34290314	GWAS catalog	EGFR tyrosine kinase inhibitor resistance FoxO signaling pathway PI3K-Akt signaling pathway +13 more
		BIN3	Unknown	29059683	GWAS catalog	—
		BNC2	Unknown	33893285	GWAS catalog	—
		BPIFB1	Unknown	32887889	GWAS catalog	Antimicrobial peptides
		BRD10	Unknown	29059683	GWAS catalog	—
		BRSK1	Unknown	29059683 40229280	GWAS catalog	—
		BTN2A1	Unknown	29059683 37467357	GWAS catalog	Butyrophilin (BTN) family interactions
		C16ORF82	Unknown	38538606	GWAS catalog	—
		C16ORF95	Unknown	38538606	GWAS catalog	—
		C19ORF12	Unknown	29058716	GWAS catalog	—
		C5ORF22	Unknown	40229280	GWAS catalog	—
		CAAP1	Unknown	40229280	GWAS catalog	—
		CABLES1	Unknown	25038754 29059683	GWAS catalog	Cyclin E associated events during G1/S transition Cyclin A:Cdk2-associated events at S phase entry
		CACFD1	Unknown	29059683	GWAS catalog	—
		CADM2	Unknown	29059683	GWAS catalog	Adherens junctions interactions
		CASP7	Unknown	29059683	GWAS catalog	Efferocytosis Apoptosis Apoptosis - multiple species +17 more
		CASP8	Unknown	29058716 29059683 32139696 32887889 33893285 34290314 34594039 37340002 38538606	GWAS catalog	Platinum drug resistance p53 signaling pathway Apoptosis +53 more
		CASTOR2	Unknown	32424353 34234117	GWAS catalog	mTOR signaling pathway Amino acids regulate mTORC1
		CASZ1	Unknown	29059683	GWAS catalog	—
		CATSPERB	Unknown	29059683	GWAS catalog	Sperm Motility And Taxes
		CAVIN1	Unknown	29059683	GWAS catalog	RNA Polymerase I Transcription Termination
		CBLN2	Unknown	38538606	GWAS catalog	—
		CBX8	Unknown	29059683	GWAS catalog	Polycomb repressive complex Oxidative Stress Induced Senescence SUMOylation of DNA damage response and repair proteins +5 more
		CCDC102B	Unknown	29059683	GWAS catalog	—
		CCDC134	Unknown	29059683	GWAS catalog	—
		CCDC171	Unknown	37851288	GWAS catalog	—
		CCDC30	Unknown	29059683	GWAS catalog	—
		CCDC33	Unknown	29059683	GWAS catalog	—
		CCDC57	Unknown	40229280	GWAS catalog	—
		CCDC87	Unknown	29059683	GWAS catalog	—
		CCDC88C	Unknown	23535729 25751625 27432226 29059683 32139696 32887889 34290314	GWAS catalog	Wnt signaling pathway
		CCDC91	Unknown	23535729 23535733 23544013 25751625 27117709 29058716 29059683 31757997 32139696 32514122 32887889 34290314 34594039 37340002 38538606	GWAS catalog	—
		CCL16	Unknown	34981446	GWAS catalog	Cytokine-cytokine receptor interaction Viral protein interaction with cytokine and cytokine receptor Chemokine signaling pathway +2 more
		CCL21	Unknown	34981446	GWAS catalog	Cytokine-cytokine receptor interaction Viral protein interaction with cytokine and cytokine receptor Chemokine signaling pathway +3 more
		CCL28	Unknown	29059683	GWAS catalog	Cytokine-cytokine receptor interaction Viral protein interaction with cytokine and cytokine receptor Chemokine signaling pathway +3 more
		CCND1	Unknown	29059683 32887889 34290314	GWAS catalog	Endocrine resistance FoxO signaling pathway Cell cycle +58 more
		CCNE1	Unknown	29058716 32887889	GWAS catalog	Cell cycle Oocyte meiosis p53 signaling pathway +24 more
		CCSER1	Unknown	29059683	GWAS catalog	—
		CD160	Unknown	29059683	GWAS catalog	Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
		CD180	Unknown	29059683	GWAS catalog	Toll Like Receptor 4 (TLR4) Cascade
		CD248	Unknown	27432226 29059683	GWAS catalog	—
FAMILIAL CANCER OF BREAST		CASP8	Unknown	—	ClinVar	Platinum drug resistance p53 signaling pathway Apoptosis +53 more
LUMINAL A BREAST CARCINOMA	MONDO_0021116	CCDC171	Unknown	37851288	GWAS catalog	—
LUMINAL B BREAST CARCINOMA	MONDO_0021115	CCDC88C	Unknown	38832928	GWAS catalog	Wnt signaling pathway

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Breast cancer

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