Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	9918
Gene name Gene Name - the full gene name approved by the HGNC.	Non-SMC condensin I complex subunit D2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	NCAPD2
Synonyms (NCBI Gene) Gene synonyms aliases	CAP-D2, CNAP1, MCPH21, hCAP-D2
Chromosome Chromosome number	12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	12p13.31

Show/Hide all(3)

SNP ID	Visualize variation	Clinical significance	Consequence
rs143795587	G>A,T	Conflicting-interpretations-of-pathogenicity	Missense variant, coding sequence variant
rs149296057	G>A	Likely-pathogenic	Splice donor variant
rs1555138550	G>T	Likely-pathogenic	Splice acceptor variant

Show/Hide all(211)

miRTarBase ID	miRNA	Experiments	Reference
MIRT016499	hsa-miR-193b-3p	Proteomics	21512034
MIRT020820	hsa-miR-155-5p	Proteomics	18668040
MIRT031777	hsa-miR-16-5p	Proteomics	18668040
MIRT051923	hsa-let-7b-5p	CLASH	23622248
MIRT051923	hsa-let-7b-5p	CLASH	23622248
MIRT046748	hsa-miR-222-3p	CLASH	23622248
MIRT045112	hsa-miR-186-5p	CLASH	23622248
MIRT045112	hsa-miR-186-5p	CLASH	23622248
MIRT043407	hsa-miR-331-3p	CLASH	23622248
MIRT042024	hsa-miR-484	CLASH	23622248
MIRT040571	hsa-miR-92b-3p	CLASH	23622248
MIRT039773	hsa-miR-615-3p	CLASH	23622248
MIRT039773	hsa-miR-615-3p	CLASH	23622248
MIRT038733	hsa-miR-93-3p	CLASH	23622248
MIRT035874	hsa-miR-1303	CLASH	23622248
MIRT052865	hsa-miR-3620-3p	CLASH	23622248
MIRT517872	hsa-miR-320e	PAR-CLIP	21572407
MIRT517871	hsa-miR-130a-3p	PAR-CLIP	21572407
MIRT517870	hsa-miR-130b-3p	PAR-CLIP	21572407
MIRT517869	hsa-miR-301a-3p	PAR-CLIP	21572407
MIRT517868	hsa-miR-301b-3p	PAR-CLIP	21572407
MIRT517867	hsa-miR-3666	PAR-CLIP	21572407
MIRT517866	hsa-miR-4295	PAR-CLIP	21572407
MIRT517865	hsa-miR-454-3p	PAR-CLIP	21572407
MIRT517864	hsa-miR-6741-3p	PAR-CLIP	21572407
MIRT517863	hsa-miR-3135b	PAR-CLIP	21572407
MIRT517862	hsa-miR-504-3p	PAR-CLIP	21572407
MIRT517861	hsa-miR-122-5p	PAR-CLIP	21572407
MIRT517860	hsa-miR-3650	PAR-CLIP	21572407
MIRT517859	hsa-miR-106a-3p	PAR-CLIP	21572407
MIRT517858	hsa-miR-8070	PAR-CLIP	21572407
MIRT517872	hsa-miR-320e	PAR-CLIP	23446348
MIRT517871	hsa-miR-130a-3p	PAR-CLIP	23446348
MIRT517870	hsa-miR-130b-3p	PAR-CLIP	23446348
MIRT517869	hsa-miR-301a-3p	PAR-CLIP	23446348
MIRT517868	hsa-miR-301b-3p	PAR-CLIP	23446348
MIRT517867	hsa-miR-3666	PAR-CLIP	23446348
MIRT517866	hsa-miR-4295	PAR-CLIP	23446348
MIRT517865	hsa-miR-454-3p	PAR-CLIP	23446348
MIRT517864	hsa-miR-6741-3p	PAR-CLIP	23446348
MIRT517863	hsa-miR-3135b	PAR-CLIP	23446348
MIRT517862	hsa-miR-504-3p	PAR-CLIP	23446348
MIRT517861	hsa-miR-122-5p	PAR-CLIP	23446348
MIRT517860	hsa-miR-3650	PAR-CLIP	23446348
MIRT517859	hsa-miR-106a-3p	PAR-CLIP	23446348
MIRT517858	hsa-miR-8070	PAR-CLIP	23446348
MIRT509768	hsa-miR-4438	PAR-CLIP	23446348
MIRT509767	hsa-miR-449b-3p	PAR-CLIP	23446348
MIRT509766	hsa-miR-371b-3p	PAR-CLIP	23446348
MIRT509765	hsa-miR-128-3p	PAR-CLIP	23446348
MIRT509764	hsa-miR-216a-3p	PAR-CLIP	23446348
MIRT509763	hsa-miR-3681-3p	PAR-CLIP	23446348
MIRT509762	hsa-miR-5095	PAR-CLIP	23446348
MIRT509761	hsa-miR-7151-3p	PAR-CLIP	23446348
MIRT509760	hsa-miR-6807-5p	PAR-CLIP	23446348
MIRT440137	hsa-miR-106b-5p	HITS-CLIP	22473208
MIRT440138	hsa-miR-20a-5p	HITS-CLIP	22473208
MIRT440137	hsa-miR-106b-5p	HITS-CLIP	22473208
MIRT727103	hsa-miR-17-5p	HITS-CLIP	22473208
MIRT727104	hsa-miR-20b-5p	HITS-CLIP	22473208
MIRT727102	hsa-miR-93-5p	HITS-CLIP	22473208
MIRT727101	hsa-miR-519d-3p	HITS-CLIP	22473208
MIRT440138	hsa-miR-20a-5p	HITS-CLIP	22473208
MIRT517872	hsa-miR-320e	PAR-CLIP	21572407
MIRT517871	hsa-miR-130a-3p	PAR-CLIP	21572407
MIRT517870	hsa-miR-130b-3p	PAR-CLIP	21572407
MIRT517869	hsa-miR-301a-3p	PAR-CLIP	21572407
MIRT517868	hsa-miR-301b-3p	PAR-CLIP	21572407
MIRT517867	hsa-miR-3666	PAR-CLIP	21572407
MIRT517866	hsa-miR-4295	PAR-CLIP	21572407
MIRT517865	hsa-miR-454-3p	PAR-CLIP	21572407
MIRT517864	hsa-miR-6741-3p	PAR-CLIP	21572407
MIRT517863	hsa-miR-3135b	PAR-CLIP	21572407
MIRT517862	hsa-miR-504-3p	PAR-CLIP	21572407
MIRT517861	hsa-miR-122-5p	PAR-CLIP	21572407
MIRT517860	hsa-miR-3650	PAR-CLIP	21572407
MIRT517859	hsa-miR-106a-3p	PAR-CLIP	21572407
MIRT517858	hsa-miR-8070	PAR-CLIP	21572407
MIRT517872	hsa-miR-320e	PAR-CLIP	23446348
MIRT517871	hsa-miR-130a-3p	PAR-CLIP	23446348
MIRT517870	hsa-miR-130b-3p	PAR-CLIP	23446348
MIRT517869	hsa-miR-301a-3p	PAR-CLIP	23446348
MIRT517868	hsa-miR-301b-3p	PAR-CLIP	23446348
MIRT517867	hsa-miR-3666	PAR-CLIP	23446348
MIRT517866	hsa-miR-4295	PAR-CLIP	23446348
MIRT517865	hsa-miR-454-3p	PAR-CLIP	23446348
MIRT517864	hsa-miR-6741-3p	PAR-CLIP	23446348
MIRT517863	hsa-miR-3135b	PAR-CLIP	23446348
MIRT517862	hsa-miR-504-3p	PAR-CLIP	23446348
MIRT517861	hsa-miR-122-5p	PAR-CLIP	23446348
MIRT517860	hsa-miR-3650	PAR-CLIP	23446348
MIRT517859	hsa-miR-106a-3p	PAR-CLIP	23446348
MIRT517858	hsa-miR-8070	PAR-CLIP	23446348
MIRT509768	hsa-miR-4438	PAR-CLIP	23446348
MIRT509767	hsa-miR-449b-3p	PAR-CLIP	23446348
MIRT509766	hsa-miR-371b-3p	PAR-CLIP	23446348
MIRT509765	hsa-miR-128-3p	PAR-CLIP	23446348
MIRT509764	hsa-miR-216a-3p	PAR-CLIP	23446348
MIRT509763	hsa-miR-3681-3p	PAR-CLIP	23446348
MIRT509762	hsa-miR-5095	PAR-CLIP	23446348
MIRT509761	hsa-miR-7151-3p	PAR-CLIP	23446348
MIRT509760	hsa-miR-6807-5p	PAR-CLIP	23446348
MIRT1175761	hsa-miR-1273f	CLIP-seq
MIRT1175762	hsa-miR-136	CLIP-seq
MIRT1175763	hsa-miR-143	CLIP-seq
MIRT1175764	hsa-miR-1976	CLIP-seq
MIRT1175765	hsa-miR-3155	CLIP-seq
MIRT1175766	hsa-miR-3155b	CLIP-seq
MIRT1175767	hsa-miR-3162-3p	CLIP-seq
MIRT1175768	hsa-miR-3170	CLIP-seq
MIRT1175769	hsa-miR-323b-3p	CLIP-seq
MIRT1175770	hsa-miR-3663-5p	CLIP-seq
MIRT1175771	hsa-miR-3689d	CLIP-seq
MIRT1175772	hsa-miR-411	CLIP-seq
MIRT1175773	hsa-miR-4261	CLIP-seq
MIRT1175774	hsa-miR-4279	CLIP-seq
MIRT1175775	hsa-miR-4423-5p	CLIP-seq
MIRT1175776	hsa-miR-4534	CLIP-seq
MIRT1175777	hsa-miR-4708-5p	CLIP-seq
MIRT1175778	hsa-miR-4716-5p	CLIP-seq
MIRT1175779	hsa-miR-4722-3p	CLIP-seq
MIRT1175780	hsa-miR-4770	CLIP-seq
MIRT1175781	hsa-miR-4777-3p	CLIP-seq
MIRT1175782	hsa-miR-4781-3p	CLIP-seq
MIRT1175783	hsa-miR-4802-5p	CLIP-seq
MIRT1175784	hsa-miR-515-5p	CLIP-seq
MIRT1175785	hsa-miR-526b	CLIP-seq
MIRT1175786	hsa-miR-624	CLIP-seq
MIRT2050865	hsa-miR-106a	CLIP-seq
MIRT2050866	hsa-miR-106b	CLIP-seq
MIRT2050867	hsa-miR-122	CLIP-seq
MIRT2050868	hsa-miR-127-5p	CLIP-seq
MIRT2050869	hsa-miR-1276	CLIP-seq
MIRT2050870	hsa-miR-130a	CLIP-seq
MIRT2050871	hsa-miR-130b	CLIP-seq
MIRT2050872	hsa-miR-154	CLIP-seq
MIRT2050873	hsa-miR-17	CLIP-seq
MIRT2050874	hsa-miR-20a	CLIP-seq
MIRT2050875	hsa-miR-20b	CLIP-seq
MIRT2050876	hsa-miR-301a	CLIP-seq
MIRT2050877	hsa-miR-301b	CLIP-seq
MIRT2050878	hsa-miR-302a	CLIP-seq
MIRT2050879	hsa-miR-302b	CLIP-seq
MIRT2050880	hsa-miR-302c	CLIP-seq
MIRT2050881	hsa-miR-302d	CLIP-seq
MIRT2050882	hsa-miR-302e	CLIP-seq
MIRT2050883	hsa-miR-33a	CLIP-seq
MIRT2050884	hsa-miR-33b	CLIP-seq
MIRT2050885	hsa-miR-3620	CLIP-seq
MIRT2050886	hsa-miR-3658	CLIP-seq
MIRT2050887	hsa-miR-372	CLIP-seq
MIRT2050888	hsa-miR-373	CLIP-seq
MIRT1175773	hsa-miR-4261	CLIP-seq
MIRT2050889	hsa-miR-4311	CLIP-seq
MIRT1175775	hsa-miR-4423-5p	CLIP-seq
MIRT2050890	hsa-miR-4470	CLIP-seq
MIRT2050891	hsa-miR-454	CLIP-seq
MIRT2050892	hsa-miR-4660	CLIP-seq
MIRT2050893	hsa-miR-4700-3p	CLIP-seq
MIRT2050894	hsa-miR-4735-5p	CLIP-seq
MIRT2050895	hsa-miR-519d	CLIP-seq
MIRT2050896	hsa-miR-520a-3p	CLIP-seq
MIRT2050897	hsa-miR-520b	CLIP-seq
MIRT2050898	hsa-miR-520c-3p	CLIP-seq
MIRT2050899	hsa-miR-520d-3p	CLIP-seq
MIRT2050900	hsa-miR-520e	CLIP-seq
MIRT2050901	hsa-miR-520g	CLIP-seq
MIRT2050902	hsa-miR-520h	CLIP-seq
MIRT2050903	hsa-miR-583	CLIP-seq
MIRT1175786	hsa-miR-624	CLIP-seq
MIRT2050904	hsa-miR-646	CLIP-seq
MIRT2050905	hsa-miR-93	CLIP-seq
MIRT2050906	hsa-miR-935	CLIP-seq
MIRT2050867	hsa-miR-122	CLIP-seq
MIRT1175761	hsa-miR-1273f	CLIP-seq
MIRT2050869	hsa-miR-1276	CLIP-seq
MIRT2050870	hsa-miR-130a	CLIP-seq
MIRT2050871	hsa-miR-130b	CLIP-seq
MIRT1175762	hsa-miR-136	CLIP-seq
MIRT2050872	hsa-miR-154	CLIP-seq
MIRT1175764	hsa-miR-1976	CLIP-seq
MIRT2050876	hsa-miR-301a	CLIP-seq
MIRT2050877	hsa-miR-301b	CLIP-seq
MIRT1175765	hsa-miR-3155	CLIP-seq
MIRT1175766	hsa-miR-3155b	CLIP-seq
MIRT1175767	hsa-miR-3162-3p	CLIP-seq
MIRT1175768	hsa-miR-3170	CLIP-seq
MIRT1175769	hsa-miR-323b-3p	CLIP-seq
MIRT2279995	hsa-miR-326	CLIP-seq
MIRT2279996	hsa-miR-330-5p	CLIP-seq
MIRT2050883	hsa-miR-33a	CLIP-seq
MIRT2050884	hsa-miR-33b	CLIP-seq
MIRT2050886	hsa-miR-3658	CLIP-seq
MIRT1175770	hsa-miR-3663-5p	CLIP-seq
MIRT2279997	hsa-miR-4284	CLIP-seq
MIRT2050889	hsa-miR-4311	CLIP-seq
MIRT2050891	hsa-miR-454	CLIP-seq
MIRT1175778	hsa-miR-4716-5p	CLIP-seq
MIRT1175779	hsa-miR-4722-3p	CLIP-seq
MIRT2050894	hsa-miR-4735-5p	CLIP-seq
MIRT1175781	hsa-miR-4777-3p	CLIP-seq
MIRT1175782	hsa-miR-4781-3p	CLIP-seq
MIRT1175784	hsa-miR-515-5p	CLIP-seq
MIRT2050903	hsa-miR-583	CLIP-seq
MIRT2050868	hsa-miR-127-5p	CLIP-seq
MIRT2050892	hsa-miR-4660	CLIP-seq
MIRT2050904	hsa-miR-646	CLIP-seq
MIRT2050906	hsa-miR-935	CLIP-seq
MIRT2279995	hsa-miR-326	CLIP-seq
MIRT2279996	hsa-miR-330-5p	CLIP-seq
MIRT2578548	hsa-miR-3937	CLIP-seq

Show/Hide all(36)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000228	Component	Nuclear chromosome	IDA	12138188
GO:0000278	Process	Mitotic cell cycle	IEA
GO:0000779	Component	Condensed chromosome, centromeric region	IBA
GO:0000793	Component	Condensed chromosome	IDA	12138188
GO:0000794	Component	Condensed nuclear chromosome	ISO
GO:0000796	Component	Condensin complex	IBA
GO:0000796	Component	Condensin complex	IDA	11136719, 12138188
GO:0000796	Component	Condensin complex	IEA
GO:0000796	Component	Condensin complex	NAS	10958694, 17268547
GO:0005515	Function	Protein binding	IPI	12138188, 17268547, 24981860, 26496610, 35271311
GO:0005634	Component	Nucleus	IEA
GO:0005634	Component	Nucleus	NAS	10958694
GO:0005654	Component	Nucleoplasm	IDA
GO:0005694	Component	Chromosome	IEA
GO:0005737	Component	Cytoplasm	IDA	12138188
GO:0005737	Component	Cytoplasm	IEA
GO:0005737	Component	Cytoplasm	NAS	10958694
GO:0005829	Component	Cytosol	IDA
GO:0005829	Component	Cytosol	TAS
GO:0007076	Process	Mitotic chromosome condensation	IBA
GO:0007076	Process	Mitotic chromosome condensation	IDA	11136719
GO:0007076	Process	Mitotic chromosome condensation	IEA
GO:0007076	Process	Mitotic chromosome condensation	IMP	27737959
GO:0007076	Process	Mitotic chromosome condensation	NAS	10958694
GO:0010032	Process	Meiotic chromosome condensation	IBA
GO:0016020	Component	Membrane	HDA	19946888
GO:0030261	Process	Chromosome condensation	IEA
GO:0034451	Component	Centriolar satellite	IDA
GO:0036064	Component	Ciliary basal body	IDA
GO:0042393	Function	Histone binding	IBA
GO:0042393	Function	Histone binding	IDA	12138188
GO:0042393	Function	Histone binding	NAS	10958694
GO:0051301	Process	Cell division	IEA
GO:0051984	Process	Positive regulation of chromosome segregation	ISO
GO:1905820	Process	Positive regulation of chromosome separation	ISO
GO:1905821	Process	Positive regulation of chromosome condensation	IDA	17268547

MIM	HGNC	e!Ensembl
615638	24305	ENSG00000010292

Protein

UniProt ID

Q15021

Protein name

Condensin complex subunit 1 (Chromosome condensation-related SMC-associated protein 1) (Chromosome-associated protein D2) (hCAP-D2) (Non-SMC condensin I complex subunit D2) (XCAP-D2 homolog)

Protein function

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF12922	Cnd1_N	75 → 240	non-SMC mitotic condensation complex subunit 1, N-term	Domain
PF12717	Cnd1	1070 → 1231	non-SMC mitotic condensation complex subunit 1	Family

Sequence

MAPQMYEFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHF
DTIYSILHHFRSIDPGLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMN
CYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLD
IRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSA
TVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGF
AAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARD
TRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLV
CKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWE
AMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREAT
GHFQESEPFSHIDPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKP
NMSDPEESRGNDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFF
VMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNL
SLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGM
MARGKPEIVGSNLDTLVSIGLDEKFPQDYRLAQQVCHAIANISDRRKPSLGKRHPPFRLP
QEHRLFERLRETVTKGFVHPDPLWIPFKEVAVTLIYQLAEGPEVICAQILQGCAKQALEK
LEEKRTSQEDPKESPAMLPTFLLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQE
HKTKDPKEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLK
VCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATG
DLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLID
PEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKD
KQTESLVEKLCQRFRTSRTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIF
SAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELEIGQAGSQRAPSAKKPS
TGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMT
EDETPKKTTPILRASARRHRS

Sequence length

1401

Interactions

View interactions

	Reactome
			Condensation of Prometaphase Chromosomes

Show/Hide Unknown Diseases (1)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Microcephaly	microcephaly 21, primary, autosomal recessive	N/A	N/A	ClinVar

Show/Hide Text Mining Associations (20)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Adenocarcinoma of Lung	Stimulate	36701707
Adenocarcinoma of Lung	Associate	37498296, 39220139
Adrenocortical Carcinoma	Associate	37498296
Alzheimer Disease	Associate	18340469, 19451718
Breast Neoplasms	Stimulate	35348268
Carcinogenesis	Associate	36701707
Carcinoma Hepatocellular	Associate	37498296
Carcinoma Renal Cell	Associate	37498296
Colitis Ulcerative	Stimulate	31885422
Endometrial Neoplasms	Associate	37498296
Glioma	Associate	37498296
Inflammation	Associate	31885422
Lymphatic Metastasis	Associate	31610177
Melanoma Cutaneous Malignant	Associate	37498296
Mesothelioma	Associate	37498296
Neoplasms	Associate	35348268, 36701707, 37498296
Neoplasms	Stimulate	39220139
Pancreatic Neoplasms	Associate	37498296
Sarcoma	Associate	37498296
Triple Negative Breast Neoplasms	Associate	31610177

NCAPD2 (non-SMC condensin I complex subunit D2)