Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
9907
Gene name Gene Name - the full gene name approved by the HGNC.
Adaptor related protein complex 5 subunit zeta 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
AP5Z1
Synonyms (NCBI Gene) Gene synonyms aliases
KIAA0415, SPG48, zeta
Chromosome Chromosome number
7
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7p22.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene was identified by genome-wide screen for genes involved in homologous recombination DNA double-strand break repair (HR-DSBR). The encoded protein was found in a complex with other proteins that have a role in HR-DSBR. Knockdown of this gene redu
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs117659667 A>G Uncertain-significance, conflicting-interpretations-of-pathogenicity Non coding transcript variant, missense variant, coding sequence variant
rs200957609 G>A Uncertain-significance, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant, non coding transcript variant
rs373919408 G>A Pathogenic Non coding transcript variant, coding sequence variant, stop gained
rs397704705 GGAT>TGCTGTAAACTGTAACTGTAAA Pathogenic 5 prime UTR variant, coding sequence variant, inframe indel, non coding transcript variant, stop gained
rs397704709 GGACCTGCCCTGCT>- Pathogenic Non coding transcript variant, frameshift variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT544594 hsa-miR-451b PAR-CLIP 20371350
MIRT544593 hsa-miR-15a-5p PAR-CLIP 20371350
MIRT544592 hsa-miR-15b-5p PAR-CLIP 20371350
MIRT544591 hsa-miR-16-5p PAR-CLIP 20371350
MIRT544590 hsa-miR-195-5p PAR-CLIP 20371350
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000045 Process Autophagosome assembly IEA
GO:0000724 Process Double-strand break repair via homologous recombination IMP 20613862
GO:0005515 Function Protein binding IPI 20613862, 32296183
GO:0005634 Component Nucleus IDA 20613862
GO:0005634 Component Nucleus IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
613653 22197 ENSG00000242802
Protein
UniProt ID O43299
Protein name AP-5 complex subunit zeta-1 (Adaptor-related protein complex 5 zeta subunit) (Zeta5)
Protein function As part of AP-5, a probable fifth adaptor protein complex it may be involved in endosomal transport. According to PubMed:20613862 it is a putative helicase required for efficient homologous recombination DNA double-strand break repair. {ECO:0000
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF14764 SPG48 320 437 AP-5 complex subunit, vesicle trafficking Family
Sequence
MFSAGAESLLHQAREIQDEELKKFCSRICKLLQAEDLGPDTLDSLQRLFLIISATKYSRR
LEKTCVDLLQATLGLPACPEQLQVLCAAILREMSPSDSLSLAWDHTQNSRQLSLVASVLL
AQGDRNEEVRAVGQGVLRALESRQPEGPSLRHLLPVMAKVVVLSPGTLQEDQATLLSKRL
VDWLRYASLQQGLPHSGGFFSTPRARQPGPVTEVDGAVATDFFTVLSSGHRFTDDQWLNV
QAFSMLRAWLLHSGPEGPGTLDTDDRSEQEGSTLSVISATSSAGRLLPPRERLREVAFEY
CQRLIEQSNRRALRKGDSDLQKACLVEAVLVLDVLCRQDPSFLYRSLSCLKALHGRVRGD
PASVRVLLPLAHFFLSHGEAAAVDSEAVYQHLFTRIPVEQFHSPMLAFEFIQFCRDNLHL
FSGHLSTLRLSFPNLFK
FLAWNSPPLTSEFVALLPALVDAGTALEMLHALLDLPCLTAVL
DLQLRSAPAASERPLWDTSLRAPSCLEAFRDPQFQGLFQYLLRPKASGATERLAPLHQLL
QPMAGCARVAQCAQAVPTLLQAFFSAVTQVADGSLINQLALLLLGRSDSLYPAPGYAAGV
HSVLSSQFLALCTLKPSLVVELARDLLEFLGSVNGLCSRASLVTSVVWAIGEYLSVTYDR
RCTVEQINKFFEALEALLFEVTQCRPSAALPRCPPQVVTVLMTTLTKLASRSQDLIPRAS
LLLSKMRTLAHSPATSSTHSEEGAEAIRTRATELLTLLKMPSVAQFVLTPSTEVCSPRYH
RDANTALPLALRTVSRLVEREAGLMPG
Sequence length 807
Interactions View interactions
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Hereditary spastic paraplegia Hereditary spastic paraplegia 48, Hereditary spastic paraplegia rs1562413480, rs988434253, rs756556933, rs397704705, rs1562404571, rs397704709, rs1562410566, rs373919408, rs1583232513, rs1562408256, rs778457903, rs1057519342, rs751778396, rs748724870, rs1554257381 N/A
retinal dystrophy Retinal dystrophy rs1562408256, rs1057519342 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Glioblastoma Glioblastoma N/A N/A GWAS
Optic Atrophy optic atrophy N/A N/A ClinVar
Restless Legs Syndrome Restless legs syndrome N/A N/A GWAS
Spastic paraplegia Spastic Paraplegia, Recessive N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Basal Cell Nevus Syndrome Associate 29081410
Cognition Disorders Associate 26085577
Macular Degeneration Associate 40081374
Mitochondrial Diseases Associate 29726929
Mitochondrial Myopathy with a Defect in Mitochondrial Protein Transport Associate 29726929
Nervous System Diseases Associate 26085577
Orofacial Cleft 1 Associate 28603561
Paraplegia Associate 26085577
Parkinson Disease Secondary Associate 26085577
Refsum Disease Infantile Associate 40081374