Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	9900
Gene name Gene Name - the full gene name approved by the HGNC.	Synaptic vesicle glycoprotein 2A
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	SV2A
Synonyms (NCBI Gene) Gene synonyms aliases	DEE113, SLC22B1, SV2
Chromosome Chromosome number	1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	1q21.2
Summary Summary of gene provided in NCBI Entrez Gene.	The protein encoded by this gene is one of three related synaptic vesicle proteins. The encoded protein may interact with synaptotagmin to enhance low frequency neurotransmission in quiescent neurons. [provided by RefSeq, Jun 2016]

Show/Hide all(239)

miRTarBase ID	miRNA	Experiments	Reference
MIRT049496	hsa-miR-92a-3p	CLASH	23622248
MIRT046699	hsa-miR-222-3p	CLASH	23622248
MIRT733630	hsa-miR-218-5p	Luciferase reporter assay, qRT-PCR	32839459
MIRT1404450	hsa-miR-1185	CLIP-seq
MIRT1404451	hsa-miR-1207-5p	CLIP-seq
MIRT1404452	hsa-miR-1224-5p	CLIP-seq
MIRT1404453	hsa-miR-1285	CLIP-seq
MIRT1404454	hsa-miR-1304	CLIP-seq
MIRT1404455	hsa-miR-1468	CLIP-seq
MIRT1404456	hsa-miR-2110	CLIP-seq
MIRT1404457	hsa-miR-2392	CLIP-seq
MIRT1404458	hsa-miR-2467-5p	CLIP-seq
MIRT1404459	hsa-miR-296-5p	CLIP-seq
MIRT1404460	hsa-miR-299-3p	CLIP-seq
MIRT1404461	hsa-miR-299-5p	CLIP-seq
MIRT1404462	hsa-miR-3150a-3p	CLIP-seq
MIRT1404463	hsa-miR-3151	CLIP-seq
MIRT1404464	hsa-miR-3175	CLIP-seq
MIRT1404465	hsa-miR-3183	CLIP-seq
MIRT1404466	hsa-miR-3187-5p	CLIP-seq
MIRT1404467	hsa-miR-3188	CLIP-seq
MIRT1404468	hsa-miR-3190	CLIP-seq
MIRT1404469	hsa-miR-3202	CLIP-seq
MIRT1404470	hsa-miR-329	CLIP-seq
MIRT1404471	hsa-miR-331-3p	CLIP-seq
MIRT1404472	hsa-miR-338-3p	CLIP-seq
MIRT1404473	hsa-miR-3605-5p	CLIP-seq
MIRT1404474	hsa-miR-3616-3p	CLIP-seq
MIRT1404475	hsa-miR-362-3p	CLIP-seq
MIRT1404476	hsa-miR-3662	CLIP-seq
MIRT1404477	hsa-miR-3679-5p	CLIP-seq
MIRT1404478	hsa-miR-3689d	CLIP-seq
MIRT1404479	hsa-miR-3915	CLIP-seq
MIRT1404480	hsa-miR-3941	CLIP-seq
MIRT1404481	hsa-miR-3975	CLIP-seq
MIRT1404482	hsa-miR-4271	CLIP-seq
MIRT1404483	hsa-miR-4308	CLIP-seq
MIRT1404484	hsa-miR-4447	CLIP-seq
MIRT1404485	hsa-miR-4472	CLIP-seq
MIRT1404486	hsa-miR-4530	CLIP-seq
MIRT1404487	hsa-miR-4533	CLIP-seq
MIRT1404488	hsa-miR-4643	CLIP-seq
MIRT1404489	hsa-miR-4649-3p	CLIP-seq
MIRT1404490	hsa-miR-466	CLIP-seq
MIRT1404491	hsa-miR-4672	CLIP-seq
MIRT1404492	hsa-miR-4689	CLIP-seq
MIRT1404493	hsa-miR-4721	CLIP-seq
MIRT1404494	hsa-miR-4723-3p	CLIP-seq
MIRT1404495	hsa-miR-4725-3p	CLIP-seq
MIRT1404496	hsa-miR-4736	CLIP-seq
MIRT1404497	hsa-miR-4738-3p	CLIP-seq
MIRT1404498	hsa-miR-4749-3p	CLIP-seq
MIRT1404499	hsa-miR-4763-3p	CLIP-seq
MIRT1404500	hsa-miR-485-3p	CLIP-seq
MIRT1404501	hsa-miR-485-5p	CLIP-seq
MIRT1404502	hsa-miR-491-5p	CLIP-seq
MIRT1404503	hsa-miR-516b	CLIP-seq
MIRT1404504	hsa-miR-554	CLIP-seq
MIRT1404505	hsa-miR-603	CLIP-seq
MIRT1404506	hsa-miR-612	CLIP-seq
MIRT1404507	hsa-miR-629	CLIP-seq
MIRT1404508	hsa-miR-760	CLIP-seq
MIRT1404509	hsa-miR-939	CLIP-seq
MIRT1404457	hsa-miR-2392	CLIP-seq
MIRT2121373	hsa-miR-24	CLIP-seq
MIRT1404464	hsa-miR-3175	CLIP-seq
MIRT2121374	hsa-miR-3184	CLIP-seq
MIRT2121375	hsa-miR-342-5p	CLIP-seq
MIRT2121376	hsa-miR-3614-3p	CLIP-seq
MIRT1404474	hsa-miR-3616-3p	CLIP-seq
MIRT2121377	hsa-miR-3663-3p	CLIP-seq
MIRT2121378	hsa-miR-3675-5p	CLIP-seq
MIRT2121379	hsa-miR-423-5p	CLIP-seq
MIRT2121380	hsa-miR-4283	CLIP-seq
MIRT2121381	hsa-miR-4434	CLIP-seq
MIRT2121382	hsa-miR-4437	CLIP-seq
MIRT2121383	hsa-miR-4489	CLIP-seq
MIRT2121384	hsa-miR-4516	CLIP-seq
MIRT2121385	hsa-miR-4651	CLIP-seq
MIRT2121386	hsa-miR-4664-5p	CLIP-seq
MIRT2121387	hsa-miR-4710	CLIP-seq
MIRT2121388	hsa-miR-4716-3p	CLIP-seq
MIRT2121389	hsa-miR-4723-5p	CLIP-seq
MIRT2121390	hsa-miR-608	CLIP-seq
MIRT1404455	hsa-miR-1468	CLIP-seq
MIRT2121374	hsa-miR-3184	CLIP-seq
MIRT2121375	hsa-miR-342-5p	CLIP-seq
MIRT2121379	hsa-miR-423-5p	CLIP-seq
MIRT2121385	hsa-miR-4651	CLIP-seq
MIRT2121386	hsa-miR-4664-5p	CLIP-seq
MIRT2121387	hsa-miR-4710	CLIP-seq
MIRT2121390	hsa-miR-608	CLIP-seq
MIRT2395441	hsa-miR-1273f	CLIP-seq
MIRT1404455	hsa-miR-1468	CLIP-seq
MIRT1404459	hsa-miR-296-5p	CLIP-seq
MIRT2395442	hsa-miR-4747-5p	CLIP-seq
MIRT2395443	hsa-miR-4779	CLIP-seq
MIRT2395444	hsa-miR-665	CLIP-seq
MIRT2440881	hsa-miR-197	CLIP-seq
MIRT1404462	hsa-miR-3150a-3p	CLIP-seq
MIRT1404464	hsa-miR-3175	CLIP-seq
MIRT2440882	hsa-miR-4698	CLIP-seq
MIRT2440883	hsa-miR-520d-5p	CLIP-seq
MIRT2440884	hsa-miR-524-5p	CLIP-seq
MIRT1404509	hsa-miR-939	CLIP-seq
MIRT2637068	hsa-miR-103a	CLIP-seq
MIRT2637069	hsa-miR-107	CLIP-seq
MIRT1404451	hsa-miR-1207-5p	CLIP-seq
MIRT1404452	hsa-miR-1224-5p	CLIP-seq
MIRT2637070	hsa-miR-1245	CLIP-seq
MIRT2637071	hsa-miR-129-5p	CLIP-seq
MIRT1404454	hsa-miR-1304	CLIP-seq
MIRT2637072	hsa-miR-132	CLIP-seq
MIRT2637073	hsa-miR-140-3p	CLIP-seq
MIRT2637074	hsa-miR-144	CLIP-seq
MIRT2637075	hsa-miR-147	CLIP-seq
MIRT2637076	hsa-miR-1827	CLIP-seq
MIRT2637077	hsa-miR-1913	CLIP-seq
MIRT2440881	hsa-miR-197	CLIP-seq
MIRT2637078	hsa-miR-2114	CLIP-seq
MIRT2637079	hsa-miR-2115	CLIP-seq
MIRT2637080	hsa-miR-212	CLIP-seq
MIRT2637081	hsa-miR-22	CLIP-seq
MIRT1404458	hsa-miR-2467-5p	CLIP-seq
MIRT2637082	hsa-miR-28-5p	CLIP-seq
MIRT2637083	hsa-miR-296-3p	CLIP-seq
MIRT1404459	hsa-miR-296-5p	CLIP-seq
MIRT2637084	hsa-miR-3074-5p	CLIP-seq
MIRT2637085	hsa-miR-3139	CLIP-seq
MIRT2637086	hsa-miR-3143	CLIP-seq
MIRT1404462	hsa-miR-3150a-3p	CLIP-seq
MIRT1404464	hsa-miR-3175	CLIP-seq
MIRT1404467	hsa-miR-3188	CLIP-seq
MIRT2637087	hsa-miR-324-3p	CLIP-seq
MIRT2637088	hsa-miR-324-5p	CLIP-seq
MIRT2637089	hsa-miR-3612	CLIP-seq
MIRT2637090	hsa-miR-3654	CLIP-seq
MIRT2637091	hsa-miR-3680	CLIP-seq
MIRT2637092	hsa-miR-3689a-3p	CLIP-seq
MIRT2637093	hsa-miR-3689c	CLIP-seq
MIRT1404479	hsa-miR-3915	CLIP-seq
MIRT2637094	hsa-miR-3928	CLIP-seq
MIRT1404481	hsa-miR-3975	CLIP-seq
MIRT2637095	hsa-miR-4257	CLIP-seq
MIRT2637096	hsa-miR-4260	CLIP-seq
MIRT2637097	hsa-miR-4278	CLIP-seq
MIRT2637098	hsa-miR-4286	CLIP-seq
MIRT2637099	hsa-miR-4318	CLIP-seq
MIRT2637100	hsa-miR-4424	CLIP-seq
MIRT2637101	hsa-miR-4459	CLIP-seq
MIRT2637102	hsa-miR-4645-3p	CLIP-seq
MIRT2637103	hsa-miR-4648	CLIP-seq
MIRT2637104	hsa-miR-4654	CLIP-seq
MIRT1404492	hsa-miR-4689	CLIP-seq
MIRT2637105	hsa-miR-4693-3p	CLIP-seq
MIRT2440882	hsa-miR-4698	CLIP-seq
MIRT2637106	hsa-miR-4704-3p	CLIP-seq
MIRT2637107	hsa-miR-4722-3p	CLIP-seq
MIRT2637108	hsa-miR-4728-5p	CLIP-seq
MIRT2637109	hsa-miR-4751	CLIP-seq
MIRT2637110	hsa-miR-4755-3p	CLIP-seq
MIRT1404499	hsa-miR-4763-3p	CLIP-seq
MIRT2637111	hsa-miR-4769-5p	CLIP-seq
MIRT2395443	hsa-miR-4779	CLIP-seq
MIRT1404501	hsa-miR-485-5p	CLIP-seq
MIRT2637112	hsa-miR-486-3p	CLIP-seq
MIRT2637113	hsa-miR-5096	CLIP-seq
MIRT2637114	hsa-miR-516a-3p	CLIP-seq
MIRT2440883	hsa-miR-520d-5p	CLIP-seq
MIRT2440884	hsa-miR-524-5p	CLIP-seq
MIRT2637115	hsa-miR-543	CLIP-seq
MIRT1404504	hsa-miR-554	CLIP-seq
MIRT2637116	hsa-miR-558	CLIP-seq
MIRT2637117	hsa-miR-615-5p	CLIP-seq
MIRT2637118	hsa-miR-650	CLIP-seq
MIRT2395444	hsa-miR-665	CLIP-seq
MIRT2637119	hsa-miR-708	CLIP-seq
MIRT1404509	hsa-miR-939	CLIP-seq
MIRT2637120	hsa-miR-940	CLIP-seq
MIRT2637068	hsa-miR-103a	CLIP-seq
MIRT2637069	hsa-miR-107	CLIP-seq
MIRT1404451	hsa-miR-1207-5p	CLIP-seq
MIRT2637071	hsa-miR-129-5p	CLIP-seq
MIRT2637072	hsa-miR-132	CLIP-seq
MIRT2637073	hsa-miR-140-3p	CLIP-seq
MIRT2637075	hsa-miR-147	CLIP-seq
MIRT2637076	hsa-miR-1827	CLIP-seq
MIRT2440881	hsa-miR-197	CLIP-seq
MIRT2637078	hsa-miR-2114	CLIP-seq
MIRT2637080	hsa-miR-212	CLIP-seq
MIRT2637081	hsa-miR-22	CLIP-seq
MIRT1404458	hsa-miR-2467-5p	CLIP-seq
MIRT2637082	hsa-miR-28-5p	CLIP-seq
MIRT2637083	hsa-miR-296-3p	CLIP-seq
MIRT1404459	hsa-miR-296-5p	CLIP-seq
MIRT2637085	hsa-miR-3139	CLIP-seq
MIRT2637086	hsa-miR-3143	CLIP-seq
MIRT1404462	hsa-miR-3150a-3p	CLIP-seq
MIRT1404464	hsa-miR-3175	CLIP-seq
MIRT1404467	hsa-miR-3188	CLIP-seq
MIRT2637088	hsa-miR-324-5p	CLIP-seq
MIRT2637089	hsa-miR-3612	CLIP-seq
MIRT2637090	hsa-miR-3654	CLIP-seq
MIRT2637091	hsa-miR-3680	CLIP-seq
MIRT2637092	hsa-miR-3689a-3p	CLIP-seq
MIRT2637093	hsa-miR-3689c	CLIP-seq
MIRT2637094	hsa-miR-3928	CLIP-seq
MIRT1404481	hsa-miR-3975	CLIP-seq
MIRT2637095	hsa-miR-4257	CLIP-seq
MIRT2637096	hsa-miR-4260	CLIP-seq
MIRT2637097	hsa-miR-4278	CLIP-seq
MIRT2637098	hsa-miR-4286	CLIP-seq
MIRT2637099	hsa-miR-4318	CLIP-seq
MIRT2637100	hsa-miR-4424	CLIP-seq
MIRT2637101	hsa-miR-4459	CLIP-seq
MIRT2637103	hsa-miR-4648	CLIP-seq
MIRT2637104	hsa-miR-4654	CLIP-seq
MIRT2637105	hsa-miR-4693-3p	CLIP-seq
MIRT2440882	hsa-miR-4698	CLIP-seq
MIRT2637106	hsa-miR-4704-3p	CLIP-seq
MIRT2637108	hsa-miR-4728-5p	CLIP-seq
MIRT2637110	hsa-miR-4755-3p	CLIP-seq
MIRT1404499	hsa-miR-4763-3p	CLIP-seq
MIRT2637111	hsa-miR-4769-5p	CLIP-seq
MIRT2395443	hsa-miR-4779	CLIP-seq
MIRT1404501	hsa-miR-485-5p	CLIP-seq
MIRT2637112	hsa-miR-486-3p	CLIP-seq
MIRT2637113	hsa-miR-5096	CLIP-seq
MIRT2440883	hsa-miR-520d-5p	CLIP-seq
MIRT2440884	hsa-miR-524-5p	CLIP-seq
MIRT2637115	hsa-miR-543	CLIP-seq
MIRT1404504	hsa-miR-554	CLIP-seq
MIRT2637116	hsa-miR-558	CLIP-seq
MIRT2637117	hsa-miR-615-5p	CLIP-seq
MIRT2637118	hsa-miR-650	CLIP-seq
MIRT2395444	hsa-miR-665	CLIP-seq
MIRT2637119	hsa-miR-708	CLIP-seq
MIRT1404509	hsa-miR-939	CLIP-seq
MIRT2637120	hsa-miR-940	CLIP-seq

Show/Hide all(28)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005783	Component	Endoplasmic reticulum	IDA
GO:0005886	Component	Plasma membrane	IEA
GO:0005886	Component	Plasma membrane	TAS
GO:0005911	Component	Cell-cell junction	IEA
GO:0006836	Process	Neurotransmitter transport	IEA
GO:0006874	Process	Intracellular calcium ion homeostasis	IEA
GO:0007268	Process	Chemical synaptic transmission	IEA
GO:0008021	Component	Synaptic vesicle	IEA
GO:0008021	Component	Synaptic vesicle	TAS	15217342
GO:0016020	Component	Membrane	IEA
GO:0016082	Process	Synaptic vesicle priming	IEA
GO:0019901	Function	Protein kinase binding	IEA
GO:0019901	Function	Protein kinase binding	ISS
GO:0022857	Function	Transmembrane transporter activity	IEA
GO:0030672	Component	Synaptic vesicle membrane	IBA
GO:0030672	Component	Synaptic vesicle membrane	IEA
GO:0030672	Component	Synaptic vesicle membrane	TAS
GO:0031410	Component	Cytoplasmic vesicle	IEA
GO:0031594	Component	Neuromuscular junction	IEA
GO:0042995	Component	Cell projection	IEA
GO:0043005	Component	Neuron projection	IBA
GO:0043005	Component	Neuron projection	IEA
GO:0045202	Component	Synapse	IEA
GO:0048786	Component	Presynaptic active zone	IEA
GO:0055085	Process	Transmembrane transport	IEA
GO:0098793	Component	Presynapse	IEA
GO:0098978	Component	Glutamatergic synapse	IEA
GO:0098982	Component	GABA-ergic synapse	IEA

MIM	HGNC	e!Ensembl
185860	20566	ENSG00000159164

Protein

UniProt ID

Q7L0J3

Protein name

Synaptic vesicle glycoprotein 2A

Protein function

Plays a role in the control of regulated secretion in neural and endocrine cells, enhancing selectively low-frequency neurotransmission. Positively regulates vesicle fusion by maintaining the readily releasable pool of secretory vesicles (By sim

PDB

4V11 , 8JLC , 8JLE , 8JLF , 8JLG , 8JLH , 8JLI , 8JS8 , 8JS9 , 8K77 , 8UO9 , 8UOA , 8YF0 , 8YF1

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00083	Sugar_tr	148 → 484	Sugar (and other) transporter	Family
PF07690	MFS_1	555 → 739	Major Facilitator Superfamily	Family

Sequence

MEEGFRDRAAFIRGAKDIAKEVKKHAAKKVVKGLDRVQDEYSRRSYSRFEEEDDDDDFPA
PSDGYYRGEGTQDEEEGGASSDATEGHDEDDEIYEGEYQGIPRAESGGKGERMADGAPLA
GVRGGLSDGEGPPGGRGEAQRRKEREELAQQYEAILRECGHGRFQWTLYFVLGLALMADG
VEVFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLS
VNSVFAFFSSFVQGYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLCMFW
MIGGVYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVLVCAFPSVFAIGALTTQPESPRF
FLENGKHDEAWMVLKQVHDTNMRAKGHPERVFSVTHIKTIHQEDELIEIQSDTGTWYQRW
GVRALSLGGQVWGNFLSCFGPEYRRITLMMMGVWFTMSFSYYGLTVWFPDMIRHLQAVDY
ASRTKVFPGERVEHVTFNFTLENQIHRGGQYFNDKFIGLRLKSVSFEDSLFEECYFEDVT
SSNTFFRNCTFINTVFYNTDLFEYKFVNSRLINSTFLHNKEGCPLDVTGTGEGAYMVYFV
SFLGTLAVLPGNIVSALLMDKIGRLRMLAGSSVMSCVSCFFLSFGNSESAMIALLCLFGG
VSIASWNALDVLTVELYPSDKRTTAFGFLNALCKLAAVLGISIFTSFVGITKAAPILFAS
AALALGSSLALKLPETRGQVLQ

Sequence length

742

Interactions

View interactions

	KEGG		Reactome
	ECM-receptor interaction		Toxicity of botulinum toxin type D (BoNT/D) Toxicity of botulinum toxin type A (BoNT/A) Toxicity of botulinum toxin type F (BoNT/F) Toxicity of botulinum toxin type E (BoNT/E)

Show/Hide Unknown Diseases (3)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Diabetes	Type 2 diabetes	N/A	N/A	GWAS
Epilepsy	epilepsy	N/A	N/A	GenCC
Epileptic encephalopathy	developmental and epileptic encephalopathy 113	N/A	N/A	GenCC

Show/Hide Text Mining Associations (33)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Alzheimer Disease	Associate	33588752, 39900278, 40640137
Anxiety	Associate	32839459
Anxiety Disorders	Associate	32839459
Brain Neoplasms	Associate	20167814
Breast Neoplasms	Associate	23244111, 26339411
Carcinoma Hepatocellular	Associate	19134008
Cerebral Palsy	Associate	23976945
Cognition Disorders	Associate	25012223
Colorectal Neoplasms	Inhibit	29084019
Corneal Dystrophy Fleck	Associate	19220410
Depressive Disorder	Associate	32839459
Epilepsy	Associate	19220410, 33588752
Epilepsy Temporal Lobe	Associate	35578248
Focal Cortical Dysplasia	Associate	19220410
Ganglioglioma	Associate	20167814
Glioblastoma	Associate	24878932
Heredodegenerative Disorders Nervous System	Associate	33588752
Malformations of Cortical Development	Associate	19220410
Myasthenic Syndromes Congenital	Associate	28544784
Myopia	Associate	28544784
Neoplasms	Stimulate	19134008
Neoplasms	Associate	20167814, 23244111, 26339411
Neoplasms	Inhibit	29084019
Neuroblastoma	Associate	18794122, 32839459, 33588752
Obsessive Compulsive Disorder	Associate	24821223
Ovarian Neoplasms	Associate	35618786
Parkinson Disease	Associate	33588752
Renal Insufficiency	Associate	28544784
Schizophrenia	Associate	34667143
Seizures	Associate	20167814
Tics	Associate	28544784
Tooth Loss	Associate	39900278
Tuberous Sclerosis	Associate	19220410

SV2A (synaptic vesicle glycoprotein 2A)