Gene Gene information from NCBI Gene database.
Entrez ID 9895
Gene name Tectonin beta-propeller repeat containing 2
Gene symbol TECPR2
Synonyms (NCBI Gene)
HSAN9KIAA0329SPG49
Chromosome 14
Chromosome location 14q32.31
Summary The protein encoded by this gene is a member of the tectonin beta-propeller repeat-containing (TECPR) family, and contains both TECPR and tryptophan-aspartic acid repeat (WD repeat) domains. This gene has been implicated in autophagy, as reduced expressio
SNPs SNP information provided by dbSNP.
13
SNP ID Visualize variation Clinical significance Consequence
rs55716270 G>A,T Likely-benign, conflicting-interpretations-of-pathogenicity Intron variant
rs199845217 C>A,G Conflicting-interpretations-of-pathogenicity Intron variant, genic downstream transcript variant
rs572609303 AGAAGA>-,AGA,AGAAGAAGA,AGAAGAAGAAGAAGA Uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, inframe insertion, inframe deletion
rs750908377 T>- Pathogenic Frameshift variant, coding sequence variant
rs751970061 T>- Pathogenic-likely-pathogenic, pathogenic Frameshift variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
654
miRTarBase ID miRNA Experiments Reference
MIRT049520 hsa-miR-92a-3p CLASH 23622248
MIRT693423 hsa-miR-6852-5p HITS-CLIP 23313552
MIRT693424 hsa-miR-1234-3p HITS-CLIP 23313552
MIRT693422 hsa-miR-7107-5p HITS-CLIP 23313552
MIRT693421 hsa-miR-6728-3p HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
5
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 20562859
GO:0005737 Component Cytoplasm IEA
GO:0006914 Process Autophagy IEA
GO:0032527 Process Protein exit from endoplasmic reticulum IBA
GO:0032527 Process Protein exit from endoplasmic reticulum IMP 26431026
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
615000 19957 ENSG00000196663
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O15040
Protein name Tectonin beta-propeller repeat-containing protein 2 (WD repeat-containing protein KIAA0329/KIAA0297)
Protein function Probably plays a role as positive regulator of autophagy.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06462 Hyd_WA 946 974 Propeller Family
PF06462 Hyd_WA 995 1026 Propeller Family
PF19193 Tectonin 1171 1326 Tectonin domain Domain
Tissue specificity TISSUE SPECIFICITY: Detected in skin fibroblast (at protein level). {ECO:0000269|PubMed:23176824}.
Sequence
MASISEPVTFREFCPLYYLLNAIPTKIQKGFRSIVVYLTALDTNGDYIAVGSSIGMLYLY
CRHLNQMRKYNFEGKTESITVVKLLSCFDDLVAAGTASGRVAVFQLVSSLPGRNKQLRRF
DVTGIHKNSITALAWSPNGMKLFSGDDKGKIVYSSLDLDQGLCNSQLVLEEPSSIVQLDY
SQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLTLYASRPGL
RLWKADVHGTVQATFILKDAFAGGVKPFELHPRLESPNSGSCSLPERHLGLVSCFFQEGW
VLSWNEYSIYLLDTVNQATVAGLEGSGDIVSVSCTENEIFFLKGDRNIIRISSRPEGLTS
TVRDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSSSLNSTDSGS
GLLPPGLQATPELGKGSQPLSQRFNAISSEDFDQELVVKPIKVKRKKKKKKTEGGSRSTC
HSSLESTPCSEFPGDSPQSLNTDLLSMTSSVLGSSVDQLSAESPDQESSFNGEVNGVPQE
NTDPETFNVLEVSGSMPDSLAEEDDIRTEMPHCHHAHGRELLNGAREDVGGSDVTGLGDE
PCPADDGPNSTQLPFQEQDSSPGAHDGEDIQPIGPQSTFCEVPLLNSLTVPSSLSWAPSA
EQWLPGTRADEGSPVEPSQEQDILTSMEASGHLSTNLWHAVTDDDTGQKEIPISERVLGS
VGGQLTPVSALAASTHKPWLEQPPRDQTLTSSDEEDIYAHGLPSSSSETSVTELGPSCSQ
QDLSRLGAEDAGLLKPDQFAESWMGYSGPGYGILSLVVSEKYIWCLDYKGGLFCSALPGA
GLRWQKFEDAVQQVAVSPSGALLWKIEQKSNRAFACGKVTIKGKRHWYEALPQAVFVALS
DDTAWIIRTSGDLYLQTGLSVDRPCARAVKVDCPYPLSQITARNNVVWALTEQRALLYRE
GVSSFCPEGEQWKC
DIVSERQALEPVCITLGDQQTLWALDIHGNLWFRTGIISKKPQGDD
DHWWQV
SITDYVVFDQCSLFQTIIHATHSVATAAQAPVEKVADKLRMAFWSQQLQCQPSL
LGVNNSGVWISSGKNEFHVAKGSLIGTYWNHVVPRGTASATKWAFVLASAAPTKEGSFLW
LCQSSKDLCSVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQVFIRTLSKSCP
TGMHWTRLDLSQLGAVKLTSLACGNQHIWACDSRGGVYFRVGTQPLNPSLMLPAWIMIEP
PVQPAGVSLVSVHSSPNDQMLWVLDSRWNVHVRTGITEEMPVGTAWEHVPGLQACQLALS
TRTVWA
RCPNGDLARRYGVTDKNPAGDYWKKIPGSVSCFTVTASDELWAVGPPGYLLQRL
TKTFSHSHGTQKSSQAAMPHPEDLEDEWEVI
Sequence length 1411
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
1339
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Hereditary spastic paraplegia Likely pathogenic; Pathogenic rs1567327482, rs750908377 RCV003120778
RCV003330660
Hereditary spastic paraplegia 49 Likely pathogenic; Pathogenic rs765874018, rs1259941860, rs2139656549, rs2139716373, rs1213755599, rs2139731631, rs200843101, rs2139743890, rs2139752366, rs2139755178, rs2139803640, rs1276623521, rs2139771776, rs2139731468, rs2139726701
View all (67 more)
RCV001375676
RCV001383376
RCV001383628
RCV001385230
RCV001383927
RCV001385005
RCV001387583
RCV001386525
RCV001384672
RCV001387120
RCV001385064
RCV001542482
RCV001542483
RCV001783861
RCV001783862
RCV001824195
RCV001988824
RCV001880503
RCV001875337
RCV001945253
RCV001945332
RCV001902457
RCV001941872
RCV001956288
RCV001872411
RCV002042020
RCV001951526
RCV001863521
RCV003077869
RCV002632270
RCV002614136
RCV002662675
RCV002650589
RCV002830080
RCV002908853
RCV002939124
RCV002991765
RCV002996804
RCV003013677
RCV003028260
RCV003038747
RCV003045660
RCV003034759
RCV003037543
RCV003057370
RCV003048357
RCV003340745
RCV003487102
RCV003536355
RCV003537835
RCV003536593
RCV003536980
RCV003536909
RCV003537022
RCV003649471
RCV003649564
RCV003649835
RCV003652518
RCV003652622
RCV003653709
RCV003653729
RCV003650004
RCV003811528
RCV003828323
RCV003875669
RCV003993581
RCV004555138
RCV000414835
RCV001250489
RCV001250490
RCV000032879
RCV003653224
RCV000662183
RCV000691751
RCV001836063
RCV001205722
RCV001230412
RCV001250127
RCV001290398
RCV001257142
RCV001290269
RCV001290270
Sensory autonomic neuropathy with intellectual disability Likely pathogenic rs1891300695 RCV001281352
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Likely benign rs55716270 RCV005907085
Cervical cancer Likely benign; Benign rs752188977, rs55716270 RCV005914969
RCV005895332
Cholangiocarcinoma Likely benign rs760017733, rs752188977, rs765768957, rs55716270 RCV005914678
RCV005914970
RCV005917590
RCV005907088
Familial cancer of breast Likely benign rs765768957, rs199845217 RCV005917589
RCV005900297
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Ataxia Associate 34130600
Birdshot Chorioretinopathy Associate 24957906
Brain Diseases Associate 34130600
Dystonic Disorders Associate 35130874
Frontotemporal Dementia Associate 34130600
Gaucher Disease Associate 34130600
Gerstmann Straussler Scheinker Disease Associate 34130600
Glycogen Storage Disease Associate 34130600
Heredodegenerative Disorders Nervous System Associate 23439247, 33213269
Huntington Disease Associate 34130600