Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	9785
Gene name Gene Name - the full gene name approved by the HGNC.	DEAH-box helicase 38
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	DHX38
Synonyms (NCBI Gene) Gene synonyms aliases	DDX38, PRP16, PRPF16, RP84
Chromosome Chromosome number	16
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	16q22.2
Summary Summary of gene provided in NCBI Entrez Gene.	DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and m

Show/Hide all(3)

SNP ID	Visualize variation	Clinical significance	Consequence
rs35586337	G>A	Conflicting-interpretations-of-pathogenicity	Non coding transcript variant, synonymous variant, coding sequence variant
rs766053952	G>A,T	Likely-pathogenic	Missense variant, coding sequence variant, non coding transcript variant
rs1597445687	C>T	Likely-pathogenic	Non coding transcript variant, coding sequence variant, missense variant

Show/Hide all(27)

miRTarBase ID	miRNA	Experiments	Reference
MIRT025390	hsa-miR-34a-5p	Proteomics	21566225
MIRT025390	hsa-miR-34a-5p	Proteomics	21566225
MIRT025390	hsa-miR-34a-5p	Proteomics	21566225
MIRT051303	hsa-miR-16-5p	CLASH	23622248
MIRT046022	hsa-miR-125b-5p	CLASH	23622248
MIRT041970	hsa-miR-484	CLASH	23622248
MIRT935629	hsa-miR-1224-5p	CLIP-seq
MIRT935630	hsa-miR-129-5p	CLIP-seq
MIRT935631	hsa-miR-204	CLIP-seq
MIRT935632	hsa-miR-211	CLIP-seq
MIRT935633	hsa-miR-323b-3p	CLIP-seq
MIRT935634	hsa-miR-3929	CLIP-seq
MIRT935635	hsa-miR-3938	CLIP-seq
MIRT935636	hsa-miR-4258	CLIP-seq
MIRT935637	hsa-miR-4419b	CLIP-seq
MIRT935638	hsa-miR-4478	CLIP-seq
MIRT935639	hsa-miR-4751	CLIP-seq
MIRT935640	hsa-miR-4755-5p	CLIP-seq
MIRT935641	hsa-miR-623	CLIP-seq
MIRT935642	hsa-miR-711	CLIP-seq
MIRT1976968	hsa-miR-214	CLIP-seq
MIRT1976969	hsa-miR-338-3p	CLIP-seq
MIRT1976970	hsa-miR-3619-5p	CLIP-seq
MIRT1976971	hsa-miR-3663-5p	CLIP-seq
MIRT1976972	hsa-miR-4530	CLIP-seq
MIRT1976973	hsa-miR-761	CLIP-seq
MIRT1976974	hsa-miR-873	CLIP-seq

Show/Hide all(28)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000166	Function	Nucleotide binding	IEA
GO:0000398	Process	MRNA splicing, via spliceosome	IBA
GO:0000398	Process	MRNA splicing, via spliceosome	IC	11991638
GO:0000398	Process	MRNA splicing, via spliceosome	IDA	9524131
GO:0000398	Process	MRNA splicing, via spliceosome	IEA
GO:0000398	Process	MRNA splicing, via spliceosome	TAS
GO:0003676	Function	Nucleic acid binding	IEA
GO:0003723	Function	RNA binding	HDA	22681889
GO:0003723	Function	RNA binding	IBA
GO:0003724	Function	RNA helicase activity	IEA
GO:0003724	Function	RNA helicase activity	TAS
GO:0004386	Function	Helicase activity	IEA
GO:0005515	Function	Protein binding	IPI	21044950, 22365833, 25036637, 33961781
GO:0005524	Function	ATP binding	IEA
GO:0005634	Component	Nucleus	IEA
GO:0005634	Component	Nucleus	NAS	9524131
GO:0005654	Component	Nucleoplasm	TAS
GO:0005681	Component	Spliceosomal complex	IBA
GO:0005681	Component	Spliceosomal complex	IEA
GO:0006397	Process	MRNA processing	IEA
GO:0008186	Function	ATP-dependent activity, acting on RNA	IEA
GO:0008380	Process	RNA splicing	IEA
GO:0016020	Component	Membrane	HDA	19946888
GO:0016787	Function	Hydrolase activity	IEA
GO:0016887	Function	ATP hydrolysis activity	IEA
GO:0034458	Function	3'-5' RNA helicase activity	IBA
GO:0071013	Component	Catalytic step 2 spliceosome	IDA	11991638
GO:1990904	Component	Ribonucleoprotein complex	IEA

MIM	HGNC	e!Ensembl
605584	17211	ENSG00000140829

Protein

UniProt ID

Q92620

Protein name

Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 (EC 3.6.4.13) (ATP-dependent RNA helicase DHX38) (DEAH box protein 38)

Protein function

Probable ATP-binding RNA helicase (Probable). Involved in pre-mRNA splicing as component of the spliceosome (PubMed:29301961, PubMed:9524131).

PDB

5YZG , 6ZYM , 7A5P , 8I0W

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00270	DEAD	535 → 694	DEAD/DEAH box helicase	Domain
PF00271	Helicase_C	724 → 861	Helicase conserved C-terminal domain	Family
PF04408	HA2	923 → 1056	Helicase associated domain (HA2)	Domain
PF07717	OB_NTP_bind	1069 → 1148	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain

Sequence

MGDTSEDASIHRLEGTDLDCQVGGLICKSKSAASEQHVFKAPAPRPSLLGLDLLASLKRR
EREEKDDGEDKKKSKVSSYKDWEESKDDQKDAEEEGGDQAGQNIRKDRHYRSARVETPSH
PGGVSEEFWERSRQRERERREHGVYASSKEEKDWKKEKSRDRDYDRKRDRDERDRSRHSS
RSERDGGSERSSRRNEPESPRHRPKDAATPSRSTWEEEDSGYGSSRRSQWESPSPTPSYR
DSERSHRLSTRDRDRSVRGKYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREEG
EEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQ
KRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDGR
IVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMG
VKKEEEPDKAVTEDGKVDYRTEQKFADHMKRKSEASSEFAKKKSILEQRQYLPIFAVQQE
LLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEE
MGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLN
TDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQ
EDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYS
QLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDAL
QIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKS
LGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLI
VSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKN
NNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQ
AAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEW
LAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVR
STKIYTPGRKEQGEPMTPRRTPARFGL

Sequence length

1227

Interactions

View interactions

	KEGG		Reactome
	Spliceosome		Transport of Mature mRNA derived from an Intron-Containing Transcript mRNA Splicing - Major Pathway mRNA 3'-end processing RNA Polymerase II Transcription Termination

Show/Hide Causal Diseases (1)

Disease merge term	Disease name	dbSNP ID	References
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Retinitis Pigmentosa	retinitis pigmentosa 84, Autosomal recessive retinitis pigmentosa, retinitis pigmentosa	rs766053952, rs1597445687	N/A

Show/Hide Unknown Diseases (3)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Coronary artery disease	Coronary artery disease	N/A	N/A	GWAS
Ovarian cancer	Ovarian clear cell cancer	The splicing factor DHX38/PRP16 is required for ovarian clear cell carcinoma tumorigenesis, as revealed by a CRISPR-Cas9 screen.	34965029	CBGDA
retinal dystrophy	Retinal dystrophy	N/A	N/A	ClinVar

Show/Hide Text Mining Associations (3)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Carcinoma Pancreatic Ductal	Associate	37506056
Hyperpigmentation	Associate	35719279
Retinitis Pigmentosa	Associate	30208423, 35385551, 35719279

DHX38 (DEAH-box helicase 38)