Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	9746
Gene name Gene Name - the full gene name approved by the HGNC.	Calsyntenin 3
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	CLSTN3
Synonyms (NCBI Gene) Gene synonyms aliases	CDHR14, CSTN3, alcbeta
Chromosome Chromosome number	12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	12p13.31

Show/Hide all(258)

miRTarBase ID	miRNA	Experiments	Reference
MIRT036988	hsa-miR-877-3p	CLASH	23622248
MIRT036347	hsa-miR-1229-3p	CLASH	23622248
MIRT621025	hsa-miR-4731-3p	HITS-CLIP	23313552
MIRT621024	hsa-miR-4801	HITS-CLIP	23313552
MIRT621023	hsa-miR-8485	HITS-CLIP	23313552
MIRT621022	hsa-miR-329-3p	HITS-CLIP	23313552
MIRT621021	hsa-miR-362-3p	HITS-CLIP	23313552
MIRT621020	hsa-miR-603	HITS-CLIP	23313552
MIRT621019	hsa-miR-4789-3p	HITS-CLIP	23313552
MIRT621018	hsa-miR-3922-5p	HITS-CLIP	23313552
MIRT621017	hsa-miR-4457	HITS-CLIP	23313552
MIRT621013	hsa-miR-3941	HITS-CLIP	23313552
MIRT621023	hsa-miR-8485	HITS-CLIP	23313552
MIRT631987	hsa-miR-342-3p	HITS-CLIP	23313552
MIRT631986	hsa-miR-377-3p	HITS-CLIP	23313552
MIRT621025	hsa-miR-4731-3p	HITS-CLIP	23824327
MIRT621024	hsa-miR-4801	HITS-CLIP	23824327
MIRT621023	hsa-miR-8485	HITS-CLIP	23824327
MIRT621022	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT621021	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT621020	hsa-miR-603	HITS-CLIP	23824327
MIRT621019	hsa-miR-4789-3p	HITS-CLIP	23824327
MIRT621018	hsa-miR-3922-5p	HITS-CLIP	23824327
MIRT621017	hsa-miR-4457	HITS-CLIP	23824327
MIRT631987	hsa-miR-342-3p	HITS-CLIP	23824327
MIRT621013	hsa-miR-3941	HITS-CLIP	23824327
MIRT631986	hsa-miR-377-3p	HITS-CLIP	23824327
MIRT621025	hsa-miR-4731-3p	HITS-CLIP	23824327
MIRT621024	hsa-miR-4801	HITS-CLIP	23824327
MIRT621023	hsa-miR-8485	HITS-CLIP	23824327
MIRT621022	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT621021	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT621020	hsa-miR-603	HITS-CLIP	23824327
MIRT621019	hsa-miR-4789-3p	HITS-CLIP	23824327
MIRT621018	hsa-miR-3922-5p	HITS-CLIP	23824327
MIRT621017	hsa-miR-4457	HITS-CLIP	23824327
MIRT631987	hsa-miR-342-3p	HITS-CLIP	23824327
MIRT621013	hsa-miR-3941	HITS-CLIP	23824327
MIRT631986	hsa-miR-377-3p	HITS-CLIP	23824327
MIRT621023	hsa-miR-8485	HITS-CLIP	23824327
MIRT621019	hsa-miR-4789-3p	HITS-CLIP	23824327
MIRT631987	hsa-miR-342-3p	HITS-CLIP	23824327
MIRT631986	hsa-miR-377-3p	HITS-CLIP	23824327
MIRT621025	hsa-miR-4731-3p	HITS-CLIP	23824327
MIRT621024	hsa-miR-4801	HITS-CLIP	23824327
MIRT621023	hsa-miR-8485	HITS-CLIP	23824327
MIRT621022	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT621021	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT621020	hsa-miR-603	HITS-CLIP	23824327
MIRT621019	hsa-miR-4789-3p	HITS-CLIP	23824327
MIRT621018	hsa-miR-3922-5p	HITS-CLIP	23824327
MIRT621017	hsa-miR-4457	HITS-CLIP	23824327
MIRT621016	hsa-miR-3160-3p	HITS-CLIP	23824327
MIRT621015	hsa-miR-558	HITS-CLIP	23824327
MIRT621014	hsa-miR-4487	HITS-CLIP	23824327
MIRT621013	hsa-miR-3941	HITS-CLIP	23824327
MIRT621022	hsa-miR-329-3p	HITS-CLIP	27418678
MIRT631987	hsa-miR-342-3p	HITS-CLIP	27418678
MIRT621021	hsa-miR-362-3p	HITS-CLIP	27418678
MIRT631986	hsa-miR-377-3p	HITS-CLIP	27418678
MIRT621013	hsa-miR-3941	HITS-CLIP	27418678
MIRT621019	hsa-miR-4789-3p	HITS-CLIP	27418678
MIRT621020	hsa-miR-603	HITS-CLIP	27418678
MIRT621023	hsa-miR-8485	HITS-CLIP	27418678
MIRT621025	hsa-miR-4731-3p	HITS-CLIP	23313552
MIRT621024	hsa-miR-4801	HITS-CLIP	23313552
MIRT621023	hsa-miR-8485	HITS-CLIP	23313552
MIRT621022	hsa-miR-329-3p	HITS-CLIP	23313552
MIRT621021	hsa-miR-362-3p	HITS-CLIP	23313552
MIRT621020	hsa-miR-603	HITS-CLIP	23313552
MIRT621019	hsa-miR-4789-3p	HITS-CLIP	23313552
MIRT621018	hsa-miR-3922-5p	HITS-CLIP	23313552
MIRT621017	hsa-miR-4457	HITS-CLIP	23313552
MIRT621013	hsa-miR-3941	HITS-CLIP	23313552
MIRT621023	hsa-miR-8485	HITS-CLIP	23313552
MIRT631987	hsa-miR-342-3p	HITS-CLIP	23313552
MIRT631986	hsa-miR-377-3p	HITS-CLIP	23313552
MIRT621025	hsa-miR-4731-3p	HITS-CLIP	23824327
MIRT621024	hsa-miR-4801	HITS-CLIP	23824327
MIRT621023	hsa-miR-8485	HITS-CLIP	23824327
MIRT621022	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT621021	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT621020	hsa-miR-603	HITS-CLIP	23824327
MIRT621019	hsa-miR-4789-3p	HITS-CLIP	23824327
MIRT621018	hsa-miR-3922-5p	HITS-CLIP	23824327
MIRT621017	hsa-miR-4457	HITS-CLIP	23824327
MIRT631987	hsa-miR-342-3p	HITS-CLIP	23824327
MIRT621013	hsa-miR-3941	HITS-CLIP	23824327
MIRT631986	hsa-miR-377-3p	HITS-CLIP	23824327
MIRT621025	hsa-miR-4731-3p	HITS-CLIP	23824327
MIRT621024	hsa-miR-4801	HITS-CLIP	23824327
MIRT621023	hsa-miR-8485	HITS-CLIP	23824327
MIRT621022	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT621021	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT621020	hsa-miR-603	HITS-CLIP	23824327
MIRT621019	hsa-miR-4789-3p	HITS-CLIP	23824327
MIRT621018	hsa-miR-3922-5p	HITS-CLIP	23824327
MIRT621017	hsa-miR-4457	HITS-CLIP	23824327
MIRT631987	hsa-miR-342-3p	HITS-CLIP	23824327
MIRT621013	hsa-miR-3941	HITS-CLIP	23824327
MIRT631986	hsa-miR-377-3p	HITS-CLIP	23824327
MIRT621023	hsa-miR-8485	HITS-CLIP	23824327
MIRT621019	hsa-miR-4789-3p	HITS-CLIP	23824327
MIRT631987	hsa-miR-342-3p	HITS-CLIP	23824327
MIRT631986	hsa-miR-377-3p	HITS-CLIP	23824327
MIRT621025	hsa-miR-4731-3p	HITS-CLIP	23824327
MIRT621024	hsa-miR-4801	HITS-CLIP	23824327
MIRT621023	hsa-miR-8485	HITS-CLIP	23824327
MIRT621022	hsa-miR-329-3p	HITS-CLIP	23824327
MIRT621021	hsa-miR-362-3p	HITS-CLIP	23824327
MIRT621020	hsa-miR-603	HITS-CLIP	23824327
MIRT621019	hsa-miR-4789-3p	HITS-CLIP	23824327
MIRT621018	hsa-miR-3922-5p	HITS-CLIP	23824327
MIRT621017	hsa-miR-4457	HITS-CLIP	23824327
MIRT621016	hsa-miR-3160-3p	HITS-CLIP	23824327
MIRT621015	hsa-miR-558	HITS-CLIP	23824327
MIRT621014	hsa-miR-4487	HITS-CLIP	23824327
MIRT621013	hsa-miR-3941	HITS-CLIP	23824327
MIRT897998	hsa-miR-185	CLIP-seq
MIRT897999	hsa-miR-203	CLIP-seq
MIRT898000	hsa-miR-2052	CLIP-seq
MIRT898001	hsa-miR-3151	CLIP-seq
MIRT898002	hsa-miR-3154	CLIP-seq
MIRT898003	hsa-miR-3169	CLIP-seq
MIRT898004	hsa-miR-3170	CLIP-seq
MIRT898005	hsa-miR-3173-3p	CLIP-seq
MIRT898006	hsa-miR-3179	CLIP-seq
MIRT898007	hsa-miR-3180	CLIP-seq
MIRT898008	hsa-miR-3180-3p	CLIP-seq
MIRT898009	hsa-miR-3196	CLIP-seq
MIRT898010	hsa-miR-3202	CLIP-seq
MIRT898011	hsa-miR-3646	CLIP-seq
MIRT898012	hsa-miR-3688-3p	CLIP-seq
MIRT898013	hsa-miR-4306	CLIP-seq
MIRT898014	hsa-miR-4515	CLIP-seq
MIRT898015	hsa-miR-4520a-3p	CLIP-seq
MIRT898016	hsa-miR-4644	CLIP-seq
MIRT898017	hsa-miR-4694-3p	CLIP-seq
MIRT898018	hsa-miR-4701-5p	CLIP-seq
MIRT898019	hsa-miR-4731-5p	CLIP-seq
MIRT898020	hsa-miR-4733-3p	CLIP-seq
MIRT898021	hsa-miR-4747-5p	CLIP-seq
MIRT898022	hsa-miR-4768-3p	CLIP-seq
MIRT898023	hsa-miR-488	CLIP-seq
MIRT898024	hsa-miR-588	CLIP-seq
MIRT1966295	hsa-miR-1224-3p	CLIP-seq
MIRT1966296	hsa-miR-1260	CLIP-seq
MIRT1966297	hsa-miR-1260b	CLIP-seq
MIRT1966298	hsa-miR-1280	CLIP-seq
MIRT897999	hsa-miR-203	CLIP-seq
MIRT1966299	hsa-miR-2355-5p	CLIP-seq
MIRT1966300	hsa-miR-3126-5p	CLIP-seq
MIRT1966301	hsa-miR-3184	CLIP-seq
MIRT1966302	hsa-miR-361-3p	CLIP-seq
MIRT1966303	hsa-miR-423-5p	CLIP-seq
MIRT1966304	hsa-miR-4323	CLIP-seq
MIRT1966305	hsa-miR-4419a	CLIP-seq
MIRT1966306	hsa-miR-4436a	CLIP-seq
MIRT1966307	hsa-miR-4494	CLIP-seq
MIRT1966308	hsa-miR-4499	CLIP-seq
MIRT1966309	hsa-miR-4508	CLIP-seq
MIRT1966310	hsa-miR-4510	CLIP-seq
MIRT1966311	hsa-miR-4779	CLIP-seq
MIRT1966312	hsa-miR-615-5p	CLIP-seq
MIRT2202140	hsa-miR-2467-3p	CLIP-seq
MIRT2202141	hsa-miR-296-5p	CLIP-seq
MIRT2202142	hsa-miR-3158-5p	CLIP-seq
MIRT2202143	hsa-miR-3678-3p	CLIP-seq
MIRT2202144	hsa-miR-4532	CLIP-seq
MIRT2202145	hsa-miR-486-3p	CLIP-seq
MIRT2202146	hsa-miR-662	CLIP-seq
MIRT2505065	hsa-miR-122	CLIP-seq
MIRT2505066	hsa-miR-1231	CLIP-seq
MIRT2505067	hsa-miR-1233	CLIP-seq
MIRT2505068	hsa-miR-1237	CLIP-seq
MIRT2505069	hsa-miR-1248	CLIP-seq
MIRT2505070	hsa-miR-150	CLIP-seq
MIRT2505071	hsa-miR-1587	CLIP-seq
MIRT897998	hsa-miR-185	CLIP-seq
MIRT897999	hsa-miR-203	CLIP-seq
MIRT2202140	hsa-miR-2467-3p	CLIP-seq
MIRT1966300	hsa-miR-3126-5p	CLIP-seq
MIRT898001	hsa-miR-3151	CLIP-seq
MIRT2202142	hsa-miR-3158-5p	CLIP-seq
MIRT2505072	hsa-miR-3173-5p	CLIP-seq
MIRT898007	hsa-miR-3180	CLIP-seq
MIRT898008	hsa-miR-3180-3p	CLIP-seq
MIRT898009	hsa-miR-3196	CLIP-seq
MIRT2505073	hsa-miR-323-3p	CLIP-seq
MIRT2505074	hsa-miR-329	CLIP-seq
MIRT2202143	hsa-miR-3678-3p	CLIP-seq
MIRT898012	hsa-miR-3688-3p	CLIP-seq
MIRT2505075	hsa-miR-4267	CLIP-seq
MIRT898013	hsa-miR-4306	CLIP-seq
MIRT1966305	hsa-miR-4419a	CLIP-seq
MIRT2505076	hsa-miR-4492	CLIP-seq
MIRT2505077	hsa-miR-4498	CLIP-seq
MIRT1966310	hsa-miR-4510	CLIP-seq
MIRT898015	hsa-miR-4520a-3p	CLIP-seq
MIRT2505078	hsa-miR-4528	CLIP-seq
MIRT898016	hsa-miR-4644	CLIP-seq
MIRT2505079	hsa-miR-4656	CLIP-seq
MIRT2505080	hsa-miR-4668-5p	CLIP-seq
MIRT2505081	hsa-miR-4675	CLIP-seq
MIRT898017	hsa-miR-4694-3p	CLIP-seq
MIRT2505082	hsa-miR-4713-5p	CLIP-seq
MIRT2505083	hsa-miR-4716-3p	CLIP-seq
MIRT2505084	hsa-miR-4741	CLIP-seq
MIRT898022	hsa-miR-4768-3p	CLIP-seq
MIRT2505085	hsa-miR-4793-3p	CLIP-seq
MIRT2505086	hsa-miR-4798-3p	CLIP-seq
MIRT2505087	hsa-miR-516b	CLIP-seq
MIRT2505088	hsa-miR-532-3p	CLIP-seq
MIRT2505089	hsa-miR-625	CLIP-seq
MIRT2505090	hsa-miR-654-3p	CLIP-seq
MIRT2505091	hsa-miR-762	CLIP-seq
MIRT2505092	hsa-miR-873	CLIP-seq
MIRT2505065	hsa-miR-122	CLIP-seq
MIRT2505066	hsa-miR-1231	CLIP-seq
MIRT2505067	hsa-miR-1233	CLIP-seq
MIRT2505068	hsa-miR-1237	CLIP-seq
MIRT2505069	hsa-miR-1248	CLIP-seq
MIRT2505070	hsa-miR-150	CLIP-seq
MIRT2505071	hsa-miR-1587	CLIP-seq
MIRT897999	hsa-miR-203	CLIP-seq
MIRT2202140	hsa-miR-2467-3p	CLIP-seq
MIRT1966300	hsa-miR-3126-5p	CLIP-seq
MIRT898001	hsa-miR-3151	CLIP-seq
MIRT2202142	hsa-miR-3158-5p	CLIP-seq
MIRT2505072	hsa-miR-3173-5p	CLIP-seq
MIRT898007	hsa-miR-3180	CLIP-seq
MIRT898008	hsa-miR-3180-3p	CLIP-seq
MIRT898009	hsa-miR-3196	CLIP-seq
MIRT2505073	hsa-miR-323-3p	CLIP-seq
MIRT2505074	hsa-miR-329	CLIP-seq
MIRT2202143	hsa-miR-3678-3p	CLIP-seq
MIRT898012	hsa-miR-3688-3p	CLIP-seq
MIRT2505075	hsa-miR-4267	CLIP-seq
MIRT1966305	hsa-miR-4419a	CLIP-seq
MIRT2505076	hsa-miR-4492	CLIP-seq
MIRT2505077	hsa-miR-4498	CLIP-seq
MIRT1966310	hsa-miR-4510	CLIP-seq
MIRT2505078	hsa-miR-4528	CLIP-seq
MIRT2505079	hsa-miR-4656	CLIP-seq
MIRT2505080	hsa-miR-4668-5p	CLIP-seq
MIRT2505081	hsa-miR-4675	CLIP-seq
MIRT898017	hsa-miR-4694-3p	CLIP-seq
MIRT2505082	hsa-miR-4713-5p	CLIP-seq
MIRT2505083	hsa-miR-4716-3p	CLIP-seq
MIRT2505084	hsa-miR-4741	CLIP-seq
MIRT2505085	hsa-miR-4793-3p	CLIP-seq
MIRT2505086	hsa-miR-4798-3p	CLIP-seq
MIRT2505087	hsa-miR-516b	CLIP-seq
MIRT2505088	hsa-miR-532-3p	CLIP-seq
MIRT2505089	hsa-miR-625	CLIP-seq
MIRT2505090	hsa-miR-654-3p	CLIP-seq
MIRT2505091	hsa-miR-762	CLIP-seq
MIRT2505092	hsa-miR-873	CLIP-seq

Show/Hide all(20)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000139	Component	Golgi membrane	IEA
GO:0001558	Process	Regulation of cell growth	IEA
GO:0005509	Function	Calcium ion binding	IEA
GO:0005515	Function	Protein binding	IPI	32296183
GO:0005789	Component	Endoplasmic reticulum membrane	IEA
GO:0007156	Process	Homophilic cell adhesion via plasma membrane adhesion molecules	IEA
GO:0007416	Process	Synapse assembly	IEA
GO:0009986	Component	Cell surface	IBA	21873635
GO:0030425	Component	Dendrite	IEA
GO:0032991	Component	Protein-containing complex	IEA
GO:0035249	Process	Synaptic transmission, glutamatergic	IEA
GO:0045211	Component	Postsynaptic membrane	IBA	21873635
GO:0050806	Process	Positive regulation of synaptic transmission	IBA	21873635
GO:0051932	Process	Synaptic transmission, GABAergic	IEA
GO:0051965	Process	Positive regulation of synapse assembly	IBA	21873635
GO:0098978	Component	Glutamatergic synapse	IEA
GO:0098982	Component	GABA-ergic synapse	IEA
GO:0099061	Component	Integral component of postsynaptic density membrane	IEA
GO:1902474	Process	Positive regulation of protein localization to synapse	IEA
GO:1905606	Process	Regulation of presynapse assembly	IEA

MIM	HGNC	e!Ensembl
611324	18371	ENSG00000139182

Protein

UniProt ID

Q9BQT9

Protein name

Calsyntenin-3 (Alcadein-beta) (Alc-beta)

Protein function

Postsynaptic adhesion molecule that binds to presynaptic neurexins to mediate both excitatory and inhibitory synapse formation (PubMed:25352602). Promotes synapse development by acting as a cell adhesion molecule at the postsynaptic membrane, wh

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00028	Cadherin	150 → 239	Cadherin domain	Domain

Tissue specificity

TISSUE SPECIFICITY: According to PubMed:12498782, expressed predominantly in the brain and in kidney (PubMed:12498782). Low levels in heart, skeletal muscle, liver, placenta, pancreas and lung (PubMed:12498782). According to PubMed:12972431, predominant e

Sequence

MTLLLLPLLLASLLASCSCNKANKHKPWIEAEYQGIVMENDNTVLLNPPLFALDKDAPLR
YAGEICGFRLHGSGVPFEAVILDKATGEGLIRAKEPVDCEAQKEHTFTIQAYDCGEGPDG
ANTKKSHKATVHVRVNDVNEFAPVFVERLYRAAVTEGKLYDRILRVEAIDGDCSPQYSQI
CYYEILTPNTPFLIDNDGNIENTEKLQYSGERLYKFTVTAYDCGKKRAADDAEVEIQVKP
TCKPSWQGWNKRIEYAPGAGSLALFPGIRLETCDEPLWNIQATIELQTSHVAKGCDRDNY
SERALRKLCGAATGEVDLLPMPGPNANWTAGLSVHYSQDSSLIYWFNGTQAVQVPLGGPS
GLGSGPQDSLSDHFTLSFWMKHGVTPNKGKKEEETIVCNTVQNEDGFSHYSLTVHGCRIA
FLYWPLLESARPVKFLWKLEQVCDDEWHHYALNLEFPTVTLYTDGISFDPALIHDNGLIH
PPRREPALMIGACWTEEKNKEKEKGDNSTDTTQGDPLSIHHYFHGYLAGFSVRSGRLESR
EVIECLYACREGLDYRDFESLGKGMKVHVNPSQSLLTLEGDDVETFNHALQHVAYMNTLR
FATPGVRPLRLTTAVKCFSEESCVSIPEVEGYVVVLQPDAPQILLSGTAHFARPAVDFEG
TNGVPLFPDLQITCSISHQVEAKKDESWQGTVTDTRMSDEIVHNLDGCEISLVGDDLDPE
RESLLLDTTSLQQRGLELTNTSAYLTIAGVESITVYEEILRQARYRLRHGAALYTRKFRL
SCSEMNGRYSSNEFIVEVNVLHSMNRVAHPSHVLSSQQFLHRGHQPPPEMAGHSLASSHR
NSMIPSAATLIIVVCVGFLVLMVVLGLVRIHSLHRRVSGAGGPPGASSDPKDPDLFWDDS
ALTIIVNPMESYQNRQSCVTGAVGGQQEDEDSSDSEVADSPSSDERRIIETPPHRY

Sequence length

956

Interactions

View interactions

Show/Hide Causal Diseases (2)

Disease term	Disease name	dbSNP ID	References
Causal
Colorectal cancer	Colorectal Carcinoma	rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800 View all (467 more)
Schizophrenia	Schizophrenia	rs13447324, rs387906932, rs387906933, rs863223354, rs863223355, rs776061422, rs863223349, rs748809996, rs759748655, rs863223353, rs863223350, rs863223356, rs781821239, rs863223348, rs863223346 View all (12 more)	30285260, 28991256

Show/Hide Text Mining Associations (3)

Disease Name	Relationship Type	References
Associations from Text Mining
Autism Spectrum Disorder	Associate	35205252
Bladder Exstrophy	Associate	37509153
Parkinson Disease	Associate	30833663

CLSTN3 (calsyntenin 3)