Gene Gene information from NCBI Gene database.
Entrez ID 972
Gene name CD74 molecule
Gene symbol CD74
Synonyms (NCBI Gene)
CLIPDHLAGHLADGIIIa-GAMMAp33
Chromosome 5
Chromosome location 5q33.1
Summary The protein encoded by this gene associates with class II major histocompatibility complex (MHC) and is an important chaperone that regulates antigen presentation for immune response. It also serves as cell surface receptor for the cytokine macrophage mig
miRNA miRNA information provided by mirtarbase database.
60
miRTarBase ID miRNA Experiments Reference
MIRT876158 hsa-miR-1182 CLIP-seq
MIRT876159 hsa-miR-1276 CLIP-seq
MIRT876160 hsa-miR-4269 CLIP-seq
MIRT876161 hsa-miR-4645-5p CLIP-seq
MIRT876162 hsa-miR-4673 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
NFKB1 Unknown 8164652
RELA Unknown 8164652
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
133
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane TAS
GO:0001516 Process Prostaglandin biosynthetic process IDA 12782713
GO:0001540 Function Amyloid-beta binding IPI 19849849
GO:0001934 Process Positive regulation of protein phosphorylation IDA 24942581
GO:0001961 Process Positive regulation of cytokine-mediated signaling pathway IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
142790 1697 ENSG00000019582
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P04233
Protein name HLA class II histocompatibility antigen gamma chain (HLA-DR antigens-associated invariant chain) (Ia antigen-associated invariant chain) (Ii) (CD antigen CD74) [Cleaved into: Class-II-associated invariant chain peptide (CLIP)]
Protein function Plays a critical role in MHC class II antigen processing by stabilizing peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to the endosomal/
PDB 1A6A , 1ICF , 1IIE , 1L3H , 1MUJ , 3PDO , 3PGC , 3PGD , 3QXA , 3QXD , 4AEN , 4AH2 , 4X5W , 5KSU , 5KSV , 7YX9 , 7YXB , 7Z0Q , 8VRW , 8VSJ , 8VSP , 9CYL , 9CYM
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF09307 MHC2-interact 17 129 CLIP, MHC2 interacting Domain
PF08831 MHCassoc_trimer 136 204 Class II MHC-associated invariant chain trimerisation domain Domain
PF00086 Thyroglobulin_1 208 271 Thyroglobulin type-1 repeat Domain
Tissue specificity TISSUE SPECIFICITY: Detected in urine (at protein level). {ECO:0000269|PubMed:25326458, ECO:0000269|PubMed:36213313, ECO:0000269|PubMed:37453717}.; TISSUE SPECIFICITY: [Isoform p41]: In B cells, represents 10% of total CD74 expression. {ECO:0000269|PubMed
Sequence
Sequence length 296
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Antigen processing and presentation
Tuberculosis
Herpes simplex virus 1 infection
  Cell surface interactions at the vascular wall
MHC class II antigen presentation
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
12
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Likely benign rs142001873 RCV005927403
Cervical cancer Likely benign rs142001873 RCV005927405
Colon adenocarcinoma Likely benign rs142001873 RCV005927402
Colorectal cancer Likely benign rs142001873 RCV005927406
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Acute Kidney Injury Associate 39616313
Adenocarcinoma Associate 26837769
Adenocarcinoma Mucinous Associate 26837769
Adenocarcinoma of Lung Associate 23724914, 25567908, 26486077, 26673800, 29858224, 32036070, 33000474, 33839701, 33945921, 34319660, 36096509
Alzheimer Disease Associate 33081847
Aortic Valve Stenosis Associate 37175670
Arthritis Juvenile Associate 29848367
Atherosclerosis Associate 37508563
Bile Duct Diseases Associate 40596471
Bone Diseases Metabolic Associate 25565391