Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID	9469
Gene name	Carbohydrate sulfotransferase 3
Gene symbol	CHST3
Synonyms (NCBI Gene)	C6STC6ST1HSD
Chromosome	10
Chromosome location	10q22.1
Summary	This gene encodes an enzyme which catalyzes the sulfation of chondroitin, a proteoglycan found in the extracellular matrix and most cells which is involved in cell migration and differentiation. Mutations in this gene are associated with spondylepiphyseal

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SNP ID	Visualize variation	Clinical significance	Consequence
rs28937593	G>A	Conflicting-interpretations-of-pathogenicity	Missense variant, coding sequence variant
rs121908616	T>C	Pathogenic	Missense variant, coding sequence variant
rs121908617	C>A,T	Pathogenic	Synonymous variant, missense variant, coding sequence variant
rs121908618	T>C	Pathogenic	Missense variant, coding sequence variant
rs121908619	C>A,T	Pathogenic	Stop gained, synonymous variant, coding sequence variant
rs121908620	T>C	Pathogenic	Missense variant, coding sequence variant
rs267606732	C>A,T	Pathogenic	Coding sequence variant, stop gained, missense variant
rs267606733	C>G,T	Pathogenic	Coding sequence variant, missense variant
rs267606734	G>A	Pathogenic	Coding sequence variant, missense variant
rs267606735	C>A,T	Pathogenic	Coding sequence variant, missense variant
rs747171013	G>A,T	Pathogenic	Coding sequence variant, missense variant
rs769540174	G>-,GG	Likely-pathogenic, pathogenic	Coding sequence variant, frameshift variant
rs771866012	C>G,T	Pathogenic	Coding sequence variant, missense variant
rs1057520111	C>A,T	Likely-pathogenic, uncertain-significance	Missense variant, coding sequence variant
rs1316347883	G>A,C	Pathogenic	Coding sequence variant, missense variant
rs1416783446	C>T	Pathogenic	Coding sequence variant, stop gained
rs1554817549	C>G	Likely-pathogenic	Missense variant, coding sequence variant
rs1589509307	T>G	Pathogenic	Coding sequence variant, missense variant
rs1589509884	G>-	Pathogenic	Frameshift variant, coding sequence variant
rs1589510055	GAA>-	Pathogenic	Inframe deletion, coding sequence variant

515

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miRTarBase ID	miRNA	Experiments	Reference
MIRT023379	hsa-miR-122-5p	Microarray	17612493
MIRT027845	hsa-miR-98-5p	Microarray	19088304
MIRT659521	hsa-miR-519d-5p	HITS-CLIP	23824327
MIRT659519	hsa-miR-5695	HITS-CLIP	23824327
MIRT659520	hsa-miR-3663-5p	HITS-CLIP	23824327
MIRT659518	hsa-miR-635	HITS-CLIP	23824327
MIRT659517	hsa-miR-6774-5p	HITS-CLIP	23824327
MIRT659516	hsa-miR-6131	HITS-CLIP	23824327
MIRT659515	hsa-miR-4437	HITS-CLIP	23824327
MIRT659514	hsa-miR-515-5p	HITS-CLIP	23824327
MIRT659513	hsa-miR-519e-5p	HITS-CLIP	23824327
MIRT659511	hsa-miR-4674	HITS-CLIP	23824327
MIRT659512	hsa-miR-1587	HITS-CLIP	23824327
MIRT659510	hsa-miR-3620-5p	HITS-CLIP	23824327
MIRT659509	hsa-miR-6843-3p	HITS-CLIP	23824327
MIRT659508	hsa-miR-6848-3p	HITS-CLIP	23824327
MIRT659521	hsa-miR-519d-5p	HITS-CLIP	23824327
MIRT659519	hsa-miR-5695	HITS-CLIP	23824327
MIRT659520	hsa-miR-3663-5p	HITS-CLIP	23824327
MIRT659518	hsa-miR-635	HITS-CLIP	23824327
MIRT659517	hsa-miR-6774-5p	HITS-CLIP	23824327
MIRT659516	hsa-miR-6131	HITS-CLIP	23824327
MIRT659515	hsa-miR-4437	HITS-CLIP	23824327
MIRT659514	hsa-miR-515-5p	HITS-CLIP	23824327
MIRT659513	hsa-miR-519e-5p	HITS-CLIP	23824327
MIRT659511	hsa-miR-4674	HITS-CLIP	23824327
MIRT659512	hsa-miR-1587	HITS-CLIP	23824327
MIRT659510	hsa-miR-3620-5p	HITS-CLIP	23824327
MIRT659509	hsa-miR-6843-3p	HITS-CLIP	23824327
MIRT659508	hsa-miR-6848-3p	HITS-CLIP	23824327
MIRT892337	hsa-miR-1197	CLIP-seq
MIRT892338	hsa-miR-1224-3p	CLIP-seq
MIRT892339	hsa-miR-1260	CLIP-seq
MIRT892340	hsa-miR-1260b	CLIP-seq
MIRT892341	hsa-miR-1273f	CLIP-seq
MIRT892342	hsa-miR-1280	CLIP-seq
MIRT892343	hsa-miR-1284	CLIP-seq
MIRT892344	hsa-miR-1285	CLIP-seq
MIRT892345	hsa-miR-1297	CLIP-seq
MIRT892346	hsa-miR-1305	CLIP-seq
MIRT892347	hsa-miR-138	CLIP-seq
MIRT892348	hsa-miR-143	CLIP-seq
MIRT892349	hsa-miR-1913	CLIP-seq
MIRT892350	hsa-miR-2052	CLIP-seq
MIRT892351	hsa-miR-2110	CLIP-seq
MIRT892352	hsa-miR-214	CLIP-seq
MIRT892353	hsa-miR-22	CLIP-seq
MIRT892354	hsa-miR-224	CLIP-seq
MIRT892355	hsa-miR-2355-5p	CLIP-seq
MIRT892356	hsa-miR-26a	CLIP-seq
MIRT892357	hsa-miR-26b	CLIP-seq
MIRT892358	hsa-miR-2861	CLIP-seq
MIRT892359	hsa-miR-298	CLIP-seq
MIRT892360	hsa-miR-3064-5p	CLIP-seq
MIRT892361	hsa-miR-3074-5p	CLIP-seq
MIRT892362	hsa-miR-3127-5p	CLIP-seq
MIRT892363	hsa-miR-3135b	CLIP-seq
MIRT892364	hsa-miR-3136-3p	CLIP-seq
MIRT892365	hsa-miR-3150a-3p	CLIP-seq
MIRT892366	hsa-miR-3155	CLIP-seq
MIRT892367	hsa-miR-3155b	CLIP-seq
MIRT892368	hsa-miR-3175	CLIP-seq
MIRT892369	hsa-miR-3187-5p	CLIP-seq
MIRT892370	hsa-miR-3189-5p	CLIP-seq
MIRT892371	hsa-miR-3194-5p	CLIP-seq
MIRT892372	hsa-miR-3197	CLIP-seq
MIRT892373	hsa-miR-324-3p	CLIP-seq
MIRT892374	hsa-miR-328	CLIP-seq
MIRT892375	hsa-miR-342-5p	CLIP-seq
MIRT892376	hsa-miR-3619-5p	CLIP-seq
MIRT892377	hsa-miR-3652	CLIP-seq
MIRT892378	hsa-miR-3653	CLIP-seq
MIRT892379	hsa-miR-3679-3p	CLIP-seq
MIRT892380	hsa-miR-370	CLIP-seq
MIRT892381	hsa-miR-378g	CLIP-seq
MIRT892382	hsa-miR-3921	CLIP-seq
MIRT892383	hsa-miR-4268	CLIP-seq
MIRT892384	hsa-miR-4271	CLIP-seq
MIRT892385	hsa-miR-4286	CLIP-seq
MIRT892386	hsa-miR-4291	CLIP-seq
MIRT892387	hsa-miR-4301	CLIP-seq
MIRT892388	hsa-miR-4302	CLIP-seq
MIRT892389	hsa-miR-4314	CLIP-seq
MIRT892390	hsa-miR-4419a	CLIP-seq
MIRT892391	hsa-miR-4430	CLIP-seq
MIRT892392	hsa-miR-4433	CLIP-seq
MIRT892393	hsa-miR-4436a	CLIP-seq
MIRT892394	hsa-miR-4438	CLIP-seq
MIRT892395	hsa-miR-4446-5p	CLIP-seq
MIRT892396	hsa-miR-4459	CLIP-seq
MIRT892397	hsa-miR-4465	CLIP-seq
MIRT892398	hsa-miR-4485	CLIP-seq
MIRT892399	hsa-miR-4486	CLIP-seq
MIRT892400	hsa-miR-4503	CLIP-seq
MIRT892401	hsa-miR-4505	CLIP-seq
MIRT892402	hsa-miR-4510	CLIP-seq
MIRT892403	hsa-miR-4519	CLIP-seq
MIRT892404	hsa-miR-4529-5p	CLIP-seq
MIRT892405	hsa-miR-4534	CLIP-seq
MIRT892406	hsa-miR-4649-3p	CLIP-seq
MIRT892407	hsa-miR-4650-5p	CLIP-seq
MIRT892408	hsa-miR-4652-3p	CLIP-seq
MIRT892409	hsa-miR-4653-5p	CLIP-seq
MIRT892410	hsa-miR-4664-5p	CLIP-seq
MIRT892411	hsa-miR-4667-5p	CLIP-seq
MIRT892412	hsa-miR-4700-5p	CLIP-seq
MIRT892413	hsa-miR-4708-5p	CLIP-seq
MIRT892414	hsa-miR-4714-3p	CLIP-seq
MIRT892415	hsa-miR-4717-3p	CLIP-seq
MIRT892416	hsa-miR-4717-5p	CLIP-seq
MIRT892417	hsa-miR-4722-3p	CLIP-seq
MIRT892418	hsa-miR-4725-3p	CLIP-seq
MIRT892419	hsa-miR-4731-5p	CLIP-seq
MIRT892420	hsa-miR-4755-3p	CLIP-seq
MIRT892421	hsa-miR-4757-5p	CLIP-seq
MIRT892422	hsa-miR-4758-3p	CLIP-seq
MIRT892423	hsa-miR-4763-5p	CLIP-seq
MIRT892424	hsa-miR-4768-3p	CLIP-seq
MIRT892425	hsa-miR-4770	CLIP-seq
MIRT892426	hsa-miR-4779	CLIP-seq
MIRT892427	hsa-miR-4796-5p	CLIP-seq
MIRT892428	hsa-miR-484	CLIP-seq
MIRT892429	hsa-miR-485-5p	CLIP-seq
MIRT892430	hsa-miR-491-5p	CLIP-seq
MIRT892431	hsa-miR-498	CLIP-seq
MIRT892432	hsa-miR-516a-3p	CLIP-seq
MIRT892433	hsa-miR-519a	CLIP-seq
MIRT892434	hsa-miR-519b-3p	CLIP-seq
MIRT892435	hsa-miR-519c-3p	CLIP-seq
MIRT892436	hsa-miR-532-3p	CLIP-seq
MIRT892437	hsa-miR-548p	CLIP-seq
MIRT892438	hsa-miR-603	CLIP-seq
MIRT892439	hsa-miR-612	CLIP-seq
MIRT892440	hsa-miR-646	CLIP-seq
MIRT892441	hsa-miR-647	CLIP-seq
MIRT892442	hsa-miR-648	CLIP-seq
MIRT892443	hsa-miR-654-3p	CLIP-seq
MIRT892444	hsa-miR-7	CLIP-seq
MIRT892445	hsa-miR-761	CLIP-seq
MIRT892446	hsa-miR-922	CLIP-seq
MIRT892447	hsa-miR-939	CLIP-seq
MIRT1546434	hsa-miR-1304	CLIP-seq
MIRT1546435	hsa-miR-4685-5p	CLIP-seq
MIRT1964450	hsa-let-7a	CLIP-seq
MIRT1964451	hsa-let-7b	CLIP-seq
MIRT1964452	hsa-let-7c	CLIP-seq
MIRT1964453	hsa-let-7d	CLIP-seq
MIRT1964454	hsa-let-7e	CLIP-seq
MIRT1964455	hsa-let-7f	CLIP-seq
MIRT1964456	hsa-let-7g	CLIP-seq
MIRT1964457	hsa-let-7i	CLIP-seq
MIRT892337	hsa-miR-1197	CLIP-seq
MIRT1964458	hsa-miR-1224-5p	CLIP-seq
MIRT1964459	hsa-miR-1225-3p	CLIP-seq
MIRT1964460	hsa-miR-1233	CLIP-seq
MIRT1964461	hsa-miR-1236	CLIP-seq
MIRT1964462	hsa-miR-1237	CLIP-seq
MIRT1964463	hsa-miR-1288	CLIP-seq
MIRT1964464	hsa-miR-1291	CLIP-seq
MIRT892345	hsa-miR-1297	CLIP-seq
MIRT1546434	hsa-miR-1304	CLIP-seq
MIRT892346	hsa-miR-1305	CLIP-seq
MIRT1964465	hsa-miR-1343	CLIP-seq
MIRT1964466	hsa-miR-1915	CLIP-seq
MIRT1964467	hsa-miR-2053	CLIP-seq
MIRT1964468	hsa-miR-219-5p	CLIP-seq
MIRT892354	hsa-miR-224	CLIP-seq
MIRT892355	hsa-miR-2355-5p	CLIP-seq
MIRT1964469	hsa-miR-23a	CLIP-seq
MIRT1964470	hsa-miR-23b	CLIP-seq
MIRT1964471	hsa-miR-23c	CLIP-seq
MIRT892356	hsa-miR-26a	CLIP-seq
MIRT892357	hsa-miR-26b	CLIP-seq
MIRT892360	hsa-miR-3064-5p	CLIP-seq
MIRT1964472	hsa-miR-3120-3p	CLIP-seq
MIRT1964473	hsa-miR-3120-5p	CLIP-seq
MIRT1964474	hsa-miR-3127-3p	CLIP-seq
MIRT1964475	hsa-miR-3171	CLIP-seq
MIRT1964476	hsa-miR-3915	CLIP-seq
MIRT1964477	hsa-miR-3918	CLIP-seq
MIRT1964478	hsa-miR-3920	CLIP-seq
MIRT1964479	hsa-miR-3940-5p	CLIP-seq
MIRT1964480	hsa-miR-4259	CLIP-seq
MIRT892383	hsa-miR-4268	CLIP-seq
MIRT1964481	hsa-miR-4312	CLIP-seq
MIRT1964482	hsa-miR-4323	CLIP-seq
MIRT892392	hsa-miR-4433	CLIP-seq
MIRT1964483	hsa-miR-4445	CLIP-seq
MIRT892395	hsa-miR-4446-5p	CLIP-seq
MIRT1964484	hsa-miR-4448	CLIP-seq
MIRT1964485	hsa-miR-4458	CLIP-seq
MIRT892396	hsa-miR-4459	CLIP-seq
MIRT892397	hsa-miR-4465	CLIP-seq
MIRT1964486	hsa-miR-4476	CLIP-seq
MIRT1964487	hsa-miR-4500	CLIP-seq
MIRT1964488	hsa-miR-4507	CLIP-seq
MIRT1964489	hsa-miR-4521	CLIP-seq
MIRT892404	hsa-miR-4529-5p	CLIP-seq
MIRT892408	hsa-miR-4652-3p	CLIP-seq
MIRT1964490	hsa-miR-4663	CLIP-seq
MIRT1964491	hsa-miR-4689	CLIP-seq
MIRT892416	hsa-miR-4717-5p	CLIP-seq
MIRT892417	hsa-miR-4722-3p	CLIP-seq
MIRT1964492	hsa-miR-4751	CLIP-seq
MIRT1964493	hsa-miR-4762-3p	CLIP-seq
MIRT892423	hsa-miR-4763-5p	CLIP-seq
MIRT892424	hsa-miR-4768-3p	CLIP-seq
MIRT1964494	hsa-miR-4782-3p	CLIP-seq
MIRT1964495	hsa-miR-494	CLIP-seq
MIRT1964496	hsa-miR-508-3p	CLIP-seq
MIRT1964497	hsa-miR-571	CLIP-seq
MIRT1964498	hsa-miR-592	CLIP-seq
MIRT1964499	hsa-miR-597	CLIP-seq
MIRT1964500	hsa-miR-607	CLIP-seq
MIRT1964501	hsa-miR-629	CLIP-seq
MIRT1964502	hsa-miR-642a	CLIP-seq
MIRT892443	hsa-miR-654-3p	CLIP-seq
MIRT1964503	hsa-miR-664	CLIP-seq
MIRT1964504	hsa-miR-767-3p	CLIP-seq
MIRT1964505	hsa-miR-892b	CLIP-seq
MIRT1964506	hsa-miR-98	CLIP-seq
MIRT1964450	hsa-let-7a	CLIP-seq
MIRT1964451	hsa-let-7b	CLIP-seq
MIRT1964452	hsa-let-7c	CLIP-seq
MIRT1964453	hsa-let-7d	CLIP-seq
MIRT1964454	hsa-let-7e	CLIP-seq
MIRT1964455	hsa-let-7f	CLIP-seq
MIRT1964456	hsa-let-7g	CLIP-seq
MIRT1964457	hsa-let-7i	CLIP-seq
MIRT2200593	hsa-miR-1202	CLIP-seq
MIRT892338	hsa-miR-1224-3p	CLIP-seq
MIRT1964459	hsa-miR-1225-3p	CLIP-seq
MIRT2200594	hsa-miR-1225-5p	CLIP-seq
MIRT2200595	hsa-miR-1228	CLIP-seq
MIRT1964460	hsa-miR-1233	CLIP-seq
MIRT2200596	hsa-miR-1245b-5p	CLIP-seq
MIRT892339	hsa-miR-1260	CLIP-seq
MIRT892340	hsa-miR-1260b	CLIP-seq
MIRT2200597	hsa-miR-1266	CLIP-seq
MIRT2200598	hsa-miR-1269	CLIP-seq
MIRT2200599	hsa-miR-1269b	CLIP-seq
MIRT2200600	hsa-miR-1276	CLIP-seq
MIRT892342	hsa-miR-1280	CLIP-seq
MIRT1964464	hsa-miR-1291	CLIP-seq
MIRT892345	hsa-miR-1297	CLIP-seq
MIRT1546434	hsa-miR-1304	CLIP-seq
MIRT2200601	hsa-miR-1321	CLIP-seq
MIRT2200602	hsa-miR-15a	CLIP-seq
MIRT2200603	hsa-miR-15b	CLIP-seq
MIRT2200604	hsa-miR-16	CLIP-seq
MIRT892349	hsa-miR-1913	CLIP-seq
MIRT1964466	hsa-miR-1915	CLIP-seq
MIRT2200605	hsa-miR-195	CLIP-seq
MIRT2200606	hsa-miR-197	CLIP-seq
MIRT2200607	hsa-miR-202	CLIP-seq
MIRT892351	hsa-miR-2110	CLIP-seq
MIRT2200608	hsa-miR-2113	CLIP-seq
MIRT2200609	hsa-miR-2115	CLIP-seq
MIRT2200610	hsa-miR-218	CLIP-seq
MIRT892354	hsa-miR-224	CLIP-seq
MIRT2200611	hsa-miR-2278	CLIP-seq
MIRT892355	hsa-miR-2355-5p	CLIP-seq
MIRT2200612	hsa-miR-2467-3p	CLIP-seq
MIRT892356	hsa-miR-26a	CLIP-seq
MIRT892357	hsa-miR-26b	CLIP-seq
MIRT892360	hsa-miR-3064-5p	CLIP-seq
MIRT2200613	hsa-miR-3065-5p	CLIP-seq
MIRT2200614	hsa-miR-30a	CLIP-seq
MIRT2200615	hsa-miR-30b	CLIP-seq
MIRT2200616	hsa-miR-30c	CLIP-seq
MIRT2200617	hsa-miR-30d	CLIP-seq
MIRT2200618	hsa-miR-30e	CLIP-seq
MIRT1964472	hsa-miR-3120-3p	CLIP-seq
MIRT2200619	hsa-miR-3124-3p	CLIP-seq
MIRT892364	hsa-miR-3136-3p	CLIP-seq
MIRT2200620	hsa-miR-3140-3p	CLIP-seq
MIRT2200621	hsa-miR-3142	CLIP-seq
MIRT1964475	hsa-miR-3171	CLIP-seq
MIRT2200622	hsa-miR-3183	CLIP-seq
MIRT2200623	hsa-miR-3184	CLIP-seq
MIRT892371	hsa-miR-3194-5p	CLIP-seq
MIRT892373	hsa-miR-324-3p	CLIP-seq
MIRT892374	hsa-miR-328	CLIP-seq
MIRT2200624	hsa-miR-330-3p	CLIP-seq
MIRT2200625	hsa-miR-3664-3p	CLIP-seq
MIRT2200626	hsa-miR-3664-5p	CLIP-seq
MIRT2200627	hsa-miR-374c	CLIP-seq
MIRT1964479	hsa-miR-3940-5p	CLIP-seq
MIRT2200628	hsa-miR-3972	CLIP-seq
MIRT2200629	hsa-miR-412	CLIP-seq
MIRT2200630	hsa-miR-423-5p	CLIP-seq
MIRT2200631	hsa-miR-424	CLIP-seq
MIRT2200632	hsa-miR-4252	CLIP-seq
MIRT2200633	hsa-miR-4257	CLIP-seq
MIRT1964480	hsa-miR-4259	CLIP-seq
MIRT2200634	hsa-miR-4267	CLIP-seq
MIRT2200635	hsa-miR-4270	CLIP-seq
MIRT892384	hsa-miR-4271	CLIP-seq
MIRT2200636	hsa-miR-4283	CLIP-seq
MIRT2200637	hsa-miR-4311	CLIP-seq
MIRT2200638	hsa-miR-4313	CLIP-seq
MIRT1964482	hsa-miR-4323	CLIP-seq
MIRT2200639	hsa-miR-4330	CLIP-seq
MIRT892392	hsa-miR-4433	CLIP-seq
MIRT2200640	hsa-miR-4436b-5p	CLIP-seq
MIRT2200641	hsa-miR-4441	CLIP-seq
MIRT2200642	hsa-miR-4446-3p	CLIP-seq
MIRT892395	hsa-miR-4446-5p	CLIP-seq
MIRT1964485	hsa-miR-4458	CLIP-seq
MIRT892396	hsa-miR-4459	CLIP-seq
MIRT892397	hsa-miR-4465	CLIP-seq
MIRT2200643	hsa-miR-4469	CLIP-seq
MIRT2200644	hsa-miR-4481	CLIP-seq
MIRT2200645	hsa-miR-4489	CLIP-seq
MIRT2200646	hsa-miR-4493	CLIP-seq
MIRT1964487	hsa-miR-4500	CLIP-seq
MIRT892401	hsa-miR-4505	CLIP-seq
MIRT1964488	hsa-miR-4507	CLIP-seq
MIRT2200647	hsa-miR-4518	CLIP-seq
MIRT2200648	hsa-miR-4529-3p	CLIP-seq
MIRT892404	hsa-miR-4529-5p	CLIP-seq
MIRT2200649	hsa-miR-4649-5p	CLIP-seq
MIRT2200650	hsa-miR-4656	CLIP-seq
MIRT2200651	hsa-miR-4659a-3p	CLIP-seq
MIRT2200652	hsa-miR-4659b-3p	CLIP-seq
MIRT1964490	hsa-miR-4663	CLIP-seq
MIRT2200653	hsa-miR-4690-3p	CLIP-seq
MIRT2200654	hsa-miR-4691-3p	CLIP-seq
MIRT892416	hsa-miR-4717-5p	CLIP-seq
MIRT2200655	hsa-miR-4723-3p	CLIP-seq
MIRT892418	hsa-miR-4725-3p	CLIP-seq
MIRT2200656	hsa-miR-4728-5p	CLIP-seq
MIRT892419	hsa-miR-4731-5p	CLIP-seq
MIRT2200657	hsa-miR-4732-3p	CLIP-seq
MIRT2200658	hsa-miR-4739	CLIP-seq
MIRT2200659	hsa-miR-4745-5p	CLIP-seq
MIRT2200660	hsa-miR-4747-5p	CLIP-seq
MIRT2200661	hsa-miR-4756-5p	CLIP-seq
MIRT892421	hsa-miR-4757-5p	CLIP-seq
MIRT892424	hsa-miR-4768-3p	CLIP-seq
MIRT2200662	hsa-miR-4778-3p	CLIP-seq
MIRT892430	hsa-miR-491-5p	CLIP-seq
MIRT2200663	hsa-miR-497	CLIP-seq
MIRT2200664	hsa-miR-526b	CLIP-seq
MIRT892436	hsa-miR-532-3p	CLIP-seq
MIRT892437	hsa-miR-548p	CLIP-seq
MIRT1964497	hsa-miR-571	CLIP-seq
MIRT2200665	hsa-miR-578	CLIP-seq
MIRT2200666	hsa-miR-583	CLIP-seq
MIRT2200667	hsa-miR-593	CLIP-seq
MIRT2200668	hsa-miR-604	CLIP-seq
MIRT2200669	hsa-miR-636	CLIP-seq
MIRT1964502	hsa-miR-642a	CLIP-seq
MIRT892440	hsa-miR-646	CLIP-seq
MIRT892441	hsa-miR-647	CLIP-seq
MIRT2200670	hsa-miR-655	CLIP-seq
MIRT2200671	hsa-miR-942	CLIP-seq
MIRT1964506	hsa-miR-98	CLIP-seq
MIRT2200593	hsa-miR-1202	CLIP-seq
MIRT1964459	hsa-miR-1225-3p	CLIP-seq
MIRT2200594	hsa-miR-1225-5p	CLIP-seq
MIRT1964460	hsa-miR-1233	CLIP-seq
MIRT2386078	hsa-miR-1265	CLIP-seq
MIRT1964464	hsa-miR-1291	CLIP-seq
MIRT1964466	hsa-miR-1915	CLIP-seq
MIRT892371	hsa-miR-3194-5p	CLIP-seq
MIRT892372	hsa-miR-3197	CLIP-seq
MIRT2200624	hsa-miR-330-3p	CLIP-seq
MIRT2200626	hsa-miR-3664-5p	CLIP-seq
MIRT2386079	hsa-miR-3671	CLIP-seq
MIRT2386080	hsa-miR-3691-5p	CLIP-seq
MIRT2200628	hsa-miR-3972	CLIP-seq
MIRT1964482	hsa-miR-4323	CLIP-seq
MIRT2386081	hsa-miR-4456	CLIP-seq
MIRT2386082	hsa-miR-4491	CLIP-seq
MIRT2386083	hsa-miR-4530	CLIP-seq
MIRT892407	hsa-miR-4650-5p	CLIP-seq
MIRT2386084	hsa-miR-4657	CLIP-seq
MIRT2386085	hsa-miR-4660	CLIP-seq
MIRT1964490	hsa-miR-4663	CLIP-seq
MIRT892417	hsa-miR-4722-3p	CLIP-seq
MIRT2386086	hsa-miR-4752	CLIP-seq
MIRT892423	hsa-miR-4763-5p	CLIP-seq
MIRT2386087	hsa-miR-4764-5p	CLIP-seq
MIRT2386088	hsa-miR-542-3p	CLIP-seq
MIRT892440	hsa-miR-646	CLIP-seq
MIRT892444	hsa-miR-7	CLIP-seq
MIRT2436247	hsa-miR-3943	CLIP-seq
MIRT1964482	hsa-miR-4323	CLIP-seq
MIRT2436248	hsa-miR-4667-3p	CLIP-seq
MIRT2436249	hsa-miR-4691-5p	CLIP-seq
MIRT2436250	hsa-miR-4749-3p	CLIP-seq
MIRT2436251	hsa-miR-676	CLIP-seq
MIRT892353	hsa-miR-22	CLIP-seq
MIRT2447038	hsa-miR-3152-5p	CLIP-seq
MIRT2447039	hsa-miR-3160-3p	CLIP-seq
MIRT2447040	hsa-miR-4487	CLIP-seq
MIRT1546435	hsa-miR-4685-5p	CLIP-seq
MIRT2447041	hsa-miR-4774-3p	CLIP-seq
MIRT2447042	hsa-miR-558	CLIP-seq
MIRT2503382	hsa-miR-1184	CLIP-seq
MIRT1964460	hsa-miR-1233	CLIP-seq
MIRT2503383	hsa-miR-1254	CLIP-seq
MIRT2503384	hsa-miR-125a-3p	CLIP-seq
MIRT892341	hsa-miR-1273f	CLIP-seq
MIRT2503385	hsa-miR-149	CLIP-seq
MIRT2503386	hsa-miR-219-1-3p	CLIP-seq
MIRT2503387	hsa-miR-2355-3p	CLIP-seq
MIRT892360	hsa-miR-3064-5p	CLIP-seq
MIRT2503388	hsa-miR-3116	CLIP-seq
MIRT2503389	hsa-miR-3126-3p	CLIP-seq
MIRT2503390	hsa-miR-3153	CLIP-seq
MIRT2200625	hsa-miR-3664-3p	CLIP-seq
MIRT2503391	hsa-miR-3689a-3p	CLIP-seq
MIRT2503392	hsa-miR-3689c	CLIP-seq
MIRT2503393	hsa-miR-3690	CLIP-seq
MIRT2503394	hsa-miR-4287	CLIP-seq
MIRT2503395	hsa-miR-4290	CLIP-seq
MIRT2503396	hsa-miR-4308	CLIP-seq
MIRT1964481	hsa-miR-4312	CLIP-seq
MIRT2503397	hsa-miR-4418	CLIP-seq
MIRT892390	hsa-miR-4419a	CLIP-seq
MIRT892392	hsa-miR-4433	CLIP-seq
MIRT2503398	hsa-miR-4434	CLIP-seq
MIRT2503399	hsa-miR-4440	CLIP-seq
MIRT2503400	hsa-miR-4457	CLIP-seq
MIRT892396	hsa-miR-4459	CLIP-seq
MIRT2200643	hsa-miR-4469	CLIP-seq
MIRT1964486	hsa-miR-4476	CLIP-seq
MIRT892402	hsa-miR-4510	CLIP-seq
MIRT2503401	hsa-miR-4516	CLIP-seq
MIRT2503402	hsa-miR-4685-3p	CLIP-seq
MIRT2200656	hsa-miR-4728-5p	CLIP-seq
MIRT2503403	hsa-miR-4738-3p	CLIP-seq
MIRT2503404	hsa-miR-4756-3p	CLIP-seq
MIRT892424	hsa-miR-4768-3p	CLIP-seq
MIRT2503405	hsa-miR-4794	CLIP-seq
MIRT2503406	hsa-miR-509-3-5p	CLIP-seq
MIRT2503407	hsa-miR-509-5p	CLIP-seq
MIRT2503408	hsa-miR-510	CLIP-seq
MIRT2503409	hsa-miR-513b	CLIP-seq
MIRT2503410	hsa-miR-548q	CLIP-seq
MIRT2503411	hsa-miR-552	CLIP-seq
MIRT2200668	hsa-miR-604	CLIP-seq
MIRT892441	hsa-miR-647	CLIP-seq
MIRT2503412	hsa-miR-651	CLIP-seq
MIRT2503413	hsa-miR-661	CLIP-seq
MIRT2503414	hsa-miR-671-5p	CLIP-seq
MIRT2436251	hsa-miR-676	CLIP-seq
MIRT2503415	hsa-miR-711	CLIP-seq
MIRT2503382	hsa-miR-1184	CLIP-seq
MIRT2678182	hsa-miR-1185	CLIP-seq
MIRT2200596	hsa-miR-1245b-5p	CLIP-seq
MIRT2503383	hsa-miR-1254	CLIP-seq
MIRT2503384	hsa-miR-125a-3p	CLIP-seq
MIRT892341	hsa-miR-1273f	CLIP-seq
MIRT2678183	hsa-miR-1294	CLIP-seq
MIRT2678184	hsa-miR-140-3p	CLIP-seq
MIRT2678185	hsa-miR-1470	CLIP-seq
MIRT2503385	hsa-miR-149	CLIP-seq
MIRT2503386	hsa-miR-219-1-3p	CLIP-seq
MIRT2503387	hsa-miR-2355-3p	CLIP-seq
MIRT892355	hsa-miR-2355-5p	CLIP-seq
MIRT2678186	hsa-miR-2392	CLIP-seq
MIRT892360	hsa-miR-3064-5p	CLIP-seq
MIRT2503388	hsa-miR-3116	CLIP-seq
MIRT2503389	hsa-miR-3126-3p	CLIP-seq
MIRT2678187	hsa-miR-3137	CLIP-seq
MIRT2200621	hsa-miR-3142	CLIP-seq
MIRT2503390	hsa-miR-3153	CLIP-seq
MIRT2678188	hsa-miR-3605-5p	CLIP-seq
MIRT2678189	hsa-miR-3679-5p	CLIP-seq
MIRT2503391	hsa-miR-3689a-3p	CLIP-seq
MIRT2503392	hsa-miR-3689c	CLIP-seq
MIRT2503393	hsa-miR-3690	CLIP-seq
MIRT2503394	hsa-miR-4287	CLIP-seq
MIRT2503396	hsa-miR-4308	CLIP-seq
MIRT1964481	hsa-miR-4312	CLIP-seq
MIRT2200638	hsa-miR-4313	CLIP-seq
MIRT2678190	hsa-miR-4316	CLIP-seq
MIRT2503397	hsa-miR-4418	CLIP-seq
MIRT892390	hsa-miR-4419a	CLIP-seq
MIRT2503398	hsa-miR-4434	CLIP-seq
MIRT2503399	hsa-miR-4440	CLIP-seq
MIRT2503400	hsa-miR-4457	CLIP-seq
MIRT2200643	hsa-miR-4469	CLIP-seq
MIRT1964486	hsa-miR-4476	CLIP-seq
MIRT892402	hsa-miR-4510	CLIP-seq
MIRT2503401	hsa-miR-4516	CLIP-seq
MIRT2678191	hsa-miR-4677-3p	CLIP-seq
MIRT2503402	hsa-miR-4685-3p	CLIP-seq
MIRT892417	hsa-miR-4722-3p	CLIP-seq
MIRT2678192	hsa-miR-4727-5p	CLIP-seq
MIRT2200656	hsa-miR-4728-5p	CLIP-seq
MIRT2503403	hsa-miR-4738-3p	CLIP-seq
MIRT2436250	hsa-miR-4749-3p	CLIP-seq
MIRT2503404	hsa-miR-4756-3p	CLIP-seq
MIRT892423	hsa-miR-4763-5p	CLIP-seq
MIRT2503405	hsa-miR-4794	CLIP-seq
MIRT2503406	hsa-miR-509-3-5p	CLIP-seq
MIRT2503407	hsa-miR-509-5p	CLIP-seq
MIRT2503409	hsa-miR-513b	CLIP-seq
MIRT2503411	hsa-miR-552	CLIP-seq
MIRT2678193	hsa-miR-556-5p	CLIP-seq
MIRT2678194	hsa-miR-566	CLIP-seq
MIRT2200668	hsa-miR-604	CLIP-seq
MIRT2678195	hsa-miR-610	CLIP-seq
MIRT892441	hsa-miR-647	CLIP-seq
MIRT2503412	hsa-miR-651	CLIP-seq
MIRT2678196	hsa-miR-652	CLIP-seq
MIRT892443	hsa-miR-654-3p	CLIP-seq
MIRT2503413	hsa-miR-661	CLIP-seq
MIRT2503414	hsa-miR-671-5p	CLIP-seq
MIRT2436251	hsa-miR-676	CLIP-seq
MIRT2503415	hsa-miR-711	CLIP-seq

Show/Hide all (23)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000139	Component	Golgi membrane	IEA
GO:0000139	Component	Golgi membrane	TAS
GO:0001517	Function	N-acetylglucosamine 6-O-sulfotransferase activity	IBA
GO:0005794	Component	Golgi apparatus	IEA
GO:0005794	Component	Golgi apparatus	IEA
GO:0005975	Process	Carbohydrate metabolic process	IEA
GO:0006044	Process	N-acetylglucosamine metabolic process	IBA
GO:0006790	Process	Sulfur compound metabolic process	IDA	9883891
GO:0006790	Process	Sulfur compound metabolic process	IEA
GO:0008146	Function	Sulfotransferase activity	IEA
GO:0008459	Function	Chondroitin 6-sulfotransferase activity	IBA
GO:0008459	Function	Chondroitin 6-sulfotransferase activity	IDA	9883891, 15215498
GO:0008459	Function	Chondroitin 6-sulfotransferase activity	IEA
GO:0008459	Function	Chondroitin 6-sulfotransferase activity	TAS
GO:0016020	Component	Membrane	IEA
GO:0016740	Function	Transferase activity	IEA
GO:0043029	Process	T cell homeostasis	IEA
GO:0050650	Process	Chondroitin sulfate proteoglycan biosynthetic process	IBA
GO:0050650	Process	Chondroitin sulfate proteoglycan biosynthetic process	IDA	9883891
GO:0050650	Process	Chondroitin sulfate proteoglycan biosynthetic process	IEA
GO:0050650	Process	Chondroitin sulfate proteoglycan biosynthetic process	IMP	15215498
GO:0050650	Process	Chondroitin sulfate proteoglycan biosynthetic process	TAS
GO:0050698	Function	Proteoglycan sulfotransferase activity	IEA

MIM	HGNC	e!Ensembl
603799	1971	ENSG00000122863

Q7LGC8

Protein name

Carbohydrate sulfotransferase 3 (EC 2.8.2.17) (EC 2.8.2.21) (Chondroitin 6-O-sulfotransferase 1) (C6ST-1) (Chondroitin 6-sulfotransferase) (C6ST) (Galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 0) (GST-0)

Protein function

Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the transfer of sulfate to position 6 of the N-acetylgalactosamine (GalNAc) residue of chondroitin (PubMed:15215498, PubMed:9714738, PubMed:98838

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00685	Sulfotransfer_1	132 → 452	Sulfotransferase domain	Domain

Tissue specificity

TISSUE SPECIFICITY: Widely expressed in adult tissues. Expressed in heart, placenta, skeletal muscle and pancreas. Also expressed in various immune tissues such as spleen, lymph node, thymus and appendix. {ECO:0000269|PubMed:9714738}.

Sequence

MEKGLTLPQDCRDFVHSLKMRSKYALFLVFVVIVFVFIEKENKIISRVSDKLKQIPQALA
DANSTDPALILAENASLLSLSELDSAFSQLQSRLRNLSLQLGVEPAMEAAGEEEEEQRKE
EEPPRPAVAGPRRHVLLMATTRTGSSFVGEFFNQQGNIFYLFEPLWHIERTVSFEPGGAN
AAGSALVYRDVLKQLFLCDLYVLEHFITPLPEDHLTQFMFRRGSSRSLCEDPVCTPFVKK
VFEKYHCKNRRCGPLNVTLAAEACRRKEHMALKAVRIRQLEFLQPLAEDPRLDLRVIQLV
RDPRAVLASRMVAFAGKYKTWKKWLDDEGQDGLREEEVQRLRGNCESIRLSAELGLRQPA
WLRGRYMLVRYEDVARGPLQKAREMYRFAGIPLTPQVEDWIQKNTQAAHDGSGIYSTQKN
SSEQFEKWRFSMPFKLAQVVQAACGPAMRLFGYKLARDAAALTNRSVSLLEERGTFWVT

Sequence length

479

Interactions

View interactions

	KEGG		Reactome
	Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate		Chondroitin sulfate biosynthesis Defective CHST3 causes SEDCJD

896

Show/Hide Causal Diseases (2)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Larsen syndrome	Pathogenic	rs1589510055	RCV000856732
Spondyloepiphyseal dysplasia with congenital joint dislocations	Pathogenic; Likely pathogenic	rs751470049, rs1003539672, rs2131776376, rs1564532377, rs2131774158, rs200988207, rs756133268, rs1840050989, rs2131776450, rs2131774841, rs1416637363, rs2131773933, rs1378815381, rs1216480002, rs746848315 View all (27 more)	RCV001342483 RCV001806424 RCV001999870 RCV001942043 RCV001972856 RCV001889907 RCV001985149 RCV001935370 RCV002007657 RCV002227900 RCV002227910 RCV002249362 RCV002272806 RCV002274275 RCV003062276 RCV002802025 RCV002893921 RCV000006413 RCV000006414 RCV000006415 RCV000006416 RCV000006417 RCV000006418 RCV000006419 RCV000006421 RCV000006422 RCV000006423 RCV003000103 RCV003002771 RCV000210956 RCV003111525 RCV003111526 RCV003983771 RCV003990081 RCV004018289 RCV000576230 RCV000550153 RCV000528005 RCV000626195 RCV000779033 RCV001028033 RCV001213781 RCV001228470

Show/Hide Unknown Diseases (4)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
CHST3-related disorder	Likely benign; Conflicting classifications of pathogenicity	rs2494770813, rs376107245, rs369055984	RCV003901409 RCV003913086 RCV003938446
Larsen-like syndrome, B3GAT3 type	Benign; Likely benign	rs115579748, rs77124584	RCV002485155 RCV002488043
Skeletal dysplasia	Conflicting classifications of pathogenicity; Benign; Likely benign; Uncertain significance	rs144287889, rs200249458, rs202242499, rs147804585, rs3740129, rs538907004, rs766145797, rs184330297, rs189173490, rs4148941, rs886047162, rs886047164, rs115617050, rs187692473, rs886047168 View all (127 more)	RCV000331444 RCV000271319 RCV000282169 RCV000281507 RCV000378701 RCV000314315 RCV000270679 RCV000293005 RCV000396843 RCV000274342 RCV000322503 RCV000295659 RCV000338969 RCV000397014 RCV000348288 RCV000301909 RCV000350226 RCV000290376 RCV000366854 RCV000269155 RCV000399197 RCV000320125 RCV000328493 RCV000285653 RCV000362904 RCV000322766 RCV000316899 RCV000309612 RCV000268194 RCV000316362 RCV000348363 RCV000293202 RCV000370401 RCV000352644 RCV000281430 RCV000263106 RCV000304537 RCV000265498 RCV000317897 RCV000402046 RCV000386934 RCV000400260 RCV000272819 RCV000322241 RCV000352703 RCV000398733 RCV000354504 RCV000286651 RCV000365445 RCV000346707 RCV000307071 RCV000367528 RCV000298967 RCV000362698 RCV000375155 RCV000303933 RCV000274227 RCV000285587 RCV000383468 RCV000325612 RCV000308510 RCV000395460 RCV000361298 RCV000281867 RCV000394205 RCV000277899 RCV000334855 RCV000259585 RCV000339417 RCV000349883 RCV000361117 RCV000287614 RCV000376236 RCV000344900 RCV000352682 RCV000404109 RCV000399138 RCV000310437 RCV000350278 RCV000390168 RCV000269811 RCV000317651 RCV000344330 RCV000384562 RCV000335240 RCV000265466 RCV000347579 RCV000397764 RCV000402223 RCV000307906 RCV000319737 RCV000342116 RCV000338125 RCV000349982 RCV000346599 RCV000353753 RCV000366963 RCV000287484 RCV000394345 RCV000284122 RCV000314215 RCV000293058 RCV000306489 RCV000381339 RCV000306223 RCV000327039 RCV000318192 RCV000339345 RCV000403876 RCV000285109 RCV000299800 RCV000326343 RCV000279348 RCV000388673 RCV000356106 RCV000331566 RCV000401498 RCV000314473 RCV000359859 RCV000353651 RCV000385090 RCV000283525 RCV000383875 RCV000354014 RCV000296431 RCV000267573 RCV000295614 RCV000370895 RCV000350467 RCV000293576 RCV000394342 RCV000376357 RCV000372109 RCV000386961 RCV000302743 RCV000310709 RCV000262991 RCV000297233 RCV000275845 RCV000397833 RCV000331224 RCV000350295 RCV000384029
Spondyloepiphyseal dysplasia congenita	Conflicting classifications of pathogenicity; Benign; Likely benign; Uncertain significance	rs144287889, rs200249458, rs202242499, rs147804585, rs3740129, rs538907004, rs766145797, rs184330297, rs189173490, rs4148941, rs886047162, rs886047164, rs115617050, rs187692473, rs886047168 View all (127 more)	RCV000366162 RCV000365944 RCV000337241 RCV000397454 RCV000287863 RCV000275551 RCV000362849 RCV000296418 RCV000338628 RCV000314214 RCV000265095 RCV000317256 RCV000327083 RCV000281547 RCV000395531 RCV000360119 RCV000292986 RCV000325618 RCV000400871 RCV000328838 RCV000366461 RCV000294380 RCV000381955 RCV000395807 RCV000308187 RCV000265306 RCV000278037 RCV000395653 RCV000395650 RCV000262524 RCV000335472 RCV000320072 RCV000306441 RCV000294278 RCV000402515 RCV000285519 RCV000361562 RCV000357852 RCV000321314 RCV000288758 RCV000383546 RCV000307475 RCV000385924 RCV000267045 RCV000399744 RCV000400785 RCV000333672 RCV000290149 RCV000270927 RCV000312843 RCV000267046 RCV000276550 RCV000399162 RCV000271692 RCV000318256 RCV000339038 RCV000388579 RCV000320549 RCV000284374 RCV000312687 RCV000321323 RCV000357611 RCV000304292 RCV000404336 RCV000297009 RCV000363106 RCV000286195 RCV000378638 RCV000290293 RCV000395543 RCV000321642 RCV000382029 RCV000283944 RCV000401900 RCV000295439 RCV000385423 RCV000307004 RCV000393516 RCV000353671 RCV000336768 RCV000309616 RCV000262596 RCV000289384 RCV000330074 RCV000295517 RCV000357882 RCV000386974 RCV000307743 RCV000303443 RCV000309094 RCV000261025 RCV000286973 RCV000397065 RCV000405841 RCV000302226 RCV000343193 RCV000312295 RCV000291076 RCV000263280 RCV000341502 RCV000398008 RCV000337570 RCV000402600 RCV000295062 RCV000360925 RCV000363073 RCV000342589 RCV000403979 RCV000305301 RCV000377292 RCV000261024 RCV000268996 RCV000294538 RCV000316546 RCV000393600 RCV000276549 RCV000339457 RCV000274955 RCV000321264 RCV000400461 RCV000275439 RCV000323430 RCV000344547 RCV000263787 RCV000351318 RCV000259294 RCV000389670 RCV000311615 RCV000390597 RCV000332075 RCV000304251 RCV000271392 RCV000266948 RCV000330147 RCV000357570 RCV000346802 RCV000318114 RCV000300758 RCV000385513 RCV000313855 RCV000355694 RCV000311816 RCV000265056

Show/Hide Text Mining Associations (32)

Disease Name	Relationship Type	References
Associations from Text MiningDisease associations identified through Pubtator
Achondroplasia	Associate	30200136
Back Pain	Associate	30747904
Bronchopulmonary Dysplasia	Associate	34465876
Carcinoma Hepatocellular	Associate	34258170
Cartilage Diseases	Associate	36010590
Clubfoot	Associate	26572954
Contracture	Associate	26572954
COVID 19	Associate	36405703
Desbuquois syndrome	Associate	22539336
Disseminated Intravascular Coagulation	Associate	30200136
Genetic Diseases Inborn	Associate	37579195
Hearing Loss	Associate	26572954
HEM dysplasia	Associate	26572954
Inflammation	Associate	35110524
Intervertebral Disc Degeneration	Associate	30747904
Intervertebral disc disease	Associate	24216480, 35110524
Joint Dislocations	Associate	24755949, 26572954, 36042462
Kashin Beck Disease	Inhibit	28274888
Kashin Beck Disease	Associate	34151604, 36010590
Larsen Syndrome	Associate	24755949
Leukemia Promyelocytic Acute	Associate	30200136
Leukoencephalopathy with Brainstem and Spinal Cord Involvement and Lactate Elevation	Associate	15215498
Motor Neuron Disease	Associate	26572954
Multiple Organ Failure	Associate	30200136
Musculoskeletal Abnormalities	Associate	37579195
Nail Diseases	Associate	30200136
Neoplasms	Associate	30200136
Osteoarthritis	Associate	28274888, 37579195
Osteochondrodysplasias	Associate	15215498, 24755949, 26572954, 30200136, 36042462
Sexual Dysfunction Physiological	Associate	26572954
Spondyloepiphyseal dysplasia Omani type	Associate	15215498
Storm Syndrome	Associate	29178990

CHST3 (carbohydrate sulfotransferase 3)