Gene Gene information from NCBI Gene database.
Entrez ID 9394
Gene name Heparan sulfate 6-O-sulfotransferase 1
Gene symbol HS6ST1
Synonyms (NCBI Gene)
HH15HS6ST
Chromosome 2
Chromosome location 2q14.3
Summary The protein encoded by this gene is a member of the heparan sulfate biosynthetic enzyme family. Heparan sulfate biosynthetic enzymes are key components in generating a myriad of distinct heparan sulfate fine structures that carry out multiple biological a
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs199538589 G>A Conflicting-interpretations-of-pathogenicity, benign Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
313
miRTarBase ID miRNA Experiments Reference
MIRT040365 hsa-miR-615-3p CLASH 23622248
MIRT574241 hsa-miR-5692a PAR-CLIP 20371350
MIRT574239 hsa-miR-3185 PAR-CLIP 20371350
MIRT574240 hsa-miR-3653-3p PAR-CLIP 20371350
MIRT574238 hsa-miR-3658 PAR-CLIP 20371350
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
19
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane TAS
GO:0001525 Process Angiogenesis IEA
GO:0005515 Function Protein binding IPI 32296183
GO:0005794 Component Golgi apparatus IEA
GO:0005794 Component Golgi apparatus IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604846 5201 ENSG00000136720
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O60243
Protein name Heparan-sulfate 6-O-sulfotransferase 1 (HS6ST-1) (EC 2.8.2.-)
Protein function 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate. Critical for normal neuronal development where it may play
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03567 Sulfotransfer_2 79 351 Sulfotransferase family Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in fetal brain. {ECO:0000269|PubMed:9535912}.
Sequence
Sequence length 411
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Glycosaminoglycan biosynthesis - heparan sulfate / heparin   HS-GAG biosynthesis
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
32
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
HS6ST1-related disorder Likely benign; Benign; Uncertain significance rs745353899, rs199538589, rs776102619, rs534608659, rs370007456, rs759982406, rs541048846, rs543138462, rs772677352, rs61732019, rs201307896 RCV003970974
RCV003917537
RCV003954252
RCV003981642
RCV003902214
RCV003904571
RCV003964575
RCV003971886
RCV003971970
RCV003921955
RCV003952386
Hypogonadotropic hypogonadism 15 with anosmia Uncertain significance; risk factor rs780352591, rs201307896, rs761325768, rs2104908342 RCV000032892
RCV000032893
RCV000032894
RCV000032895
Hypogonadotropic hypogonadism 15 with or without anosmia Benign; Likely benign; Uncertain significance rs199538589, rs3958533, rs1693560929 RCV001258243
RCV001391312
RCV001196831
HYPOGONADOTROPIC HYPOGONADISM 15 WITH OR WITHOUT ANOSMIA, SUSCEPTIBILITY TO Benign; Likely benign rs199538589 RCV000032891
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Atherosclerosis Associate 37686257
Cerebral Infarction Associate 37686257
Combined Pituitary Hormone Deficiency Associate 35805171
Embolic Stroke Associate 37686257
Glioma Associate 29104277
Hypogonadism Associate 35669683, 35805171, 38096238
Idiopathic Pulmonary Fibrosis Associate 23962103
Kallmann Syndrome Associate 23533228
Microphthalmia Isolated 1 Associate 26207952
Neoplasm Metastasis Associate 29940912