Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
93627
Gene name Gene Name - the full gene name approved by the HGNC.
TBC1 domain containing kinase
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TBCK
Synonyms (NCBI Gene) Gene synonyms aliases
FERRY1, Fy-1, HSPC302, IHPRF3, TBCKL
Disease Acronyms (UniProt) Disease acronyms from UniProt database
IHPRF3
Chromosome Chromosome number
4
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
4q24
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein that contains a protein kinase domain, a Rhodanase-like domain and the Tre-2/Bub2/Cdc16 (TBC) domain. The encoded protein is thought to play a role in actin organization, cell growth and cell proliferation by regulating the mam
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs34840340 T>A,C Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant, non coding transcript variant
rs62321379 T>C Likely-pathogenic Splice acceptor variant
rs374319146 C>A,T Likely-pathogenic, pathogenic Intron variant, splice donor variant
rs376699648 T>A Pathogenic, likely-pathogenic Coding sequence variant, stop gained, non coding transcript variant
rs575822089 G>A Pathogenic, likely-pathogenic Intron variant, non coding transcript variant, coding sequence variant, 5 prime UTR variant, stop gained, genic upstream transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018768 hsa-miR-335-5p Microarray 18185580
MIRT611773 hsa-miR-8485 HITS-CLIP 23824327
MIRT611772 hsa-miR-329-3p HITS-CLIP 23824327
MIRT611771 hsa-miR-362-3p HITS-CLIP 23824327
MIRT611770 hsa-miR-603 HITS-CLIP 23824327
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004672 Function Protein kinase activity NAS 12471243
GO:0005096 Function GTPase activator activity IBA 21873635
GO:0005524 Function ATP binding NAS 12471243
GO:0005737 Component Cytoplasm IDA 24576458
GO:0006468 Process Protein phosphorylation NAS 12471243
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
616899 28261 ENSG00000145348
Protein
UniProt ID Q8TEA7
Protein name TBC domain-containing protein kinase-like protein (FERRY endosomal RAB5 effector complex subunit 1) (Fy-1)
Protein function Component of the FERRY complex (Five-subunit Endosomal Rab5 and RNA/ribosome intermediary) (PubMed:37267905). The FERRY complex directly interacts with mRNAs and RAB5A, and functions as a RAB5A effector involved in the localization and the distr
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00069 Pkinase 32 273 Protein kinase domain Domain
PF00566 RabGAP-TBC 470 671 Rab-GTPase-TBC domain Family
PF00581 Rhodanese 784 883 Rhodanese-like domain Domain
Sequence
MFPLKDAEMGAFTFFASALPHDVCGSNGLPLTPNSIKILGRFQILKTITHPRLCQYVDIS
RGKHERLVVVAEHCERSLEDLLRERKPVSCSTVLCIAFEVLQGLQYMNKHGIVHRALSPH
NILLDRKGHIKLAKFGLYHMTAHGDDVDFPIGYPSYLAPEVIAQGIFKTTDHMPSKKPLP
SGPKSDVWSLGIILFELCVGRKLFQSLDISERLKFLLTLDCVDDTLIVLAEEHGCLDIIK
ELPETVIDLLNKCLTFHPSKRPTPDQLMKDKVF
SEVSPLYTPFTKPASLFSSSLRCADLT
LPEDISQLCKDINNDYLAERSIEEVYYLWCLAGGDLEKELVNKEIIRSKPPICTLPNFLF
EDGESFGQGRDRSSLLDDTTVTLSLCQLRNRLKDVGGEAFYPLLEDDQSNLPHSNSNNEL
SAAATLPLIIREKDTEYQLNRIILFDRLLKAYPYKKNQIWKEARVDIPPLMRGLTWAALL
GVEGAIHAKYDAIDKDTPIPTDRQIEVDIPRCHQYDELLSSPEGHAKFRRVLKAWVVSHP
DLVYWQGLDSLCAPFLYLNFNNEALAYACMSAFIPKYLYNFFLKDNSHVIQEYLTVFSQM
IAFHDPELSNHLNEIGFIPDLYAIPWFLTMFTHVFPLHKIFHLWDTLLLGNSSFPFCIGV
AILQQLRDRLL
ANGFNECILLFSDLPEIDIERCVRESINLFCWTPKSATYRQHAQPPKPS
SDSSGGRSSAPYFSAECPDPPKTDLSRESIPLNDLKSEVSPRISAEDLIDLCELTVTGHF
KTPSKKTKSSKPKLLVVDIRNSEDFIRGHISGSINIPFSAAFTAEGELTQGPYTAMLQNF
KGKVIVIVGHVAKHTAEFAAHLVKMKYPRICILDGGINKIKPT
GLLTIPSPQI
Sequence length 893
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Carcinoma of the head and neck Squamous cell carcinoma of the head and neck rs121909237, rs121909250, rs121909251, rs121909252, rs28934571, rs28934574, rs28934576, rs28934578, rs121912664, rs397516436, rs121912666, rs397514495, rs587782705, rs193920774, rs730882001
View all (7 more)
Colorectal cancer Adenocarcinoma of large intestine rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
Developmental delay Global developmental delay, Profound global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Developmental regression Developmental regression rs1224421127
Unknown
Disease term Disease name Evidence References Source
Ptosis Blepharoptosis ClinVar
Oligodendroglioma Oligodendroglioma GWAS
Associations from Text Mining
Disease Name Relationship Type References
Alcohol Related Disorders Associate 36317458
Angiofibroma Associate 27633981
Brain Diseases Associate 27040692, 29283439, 33001864
Central Nervous System Vascular Malformations Associate 32363625
Cognition Disorders Associate 32363625
COVID 19 Associate 38327202
Death Associate 30591081
Developmental Disabilities Associate 30591081, 32363625
Diastrophic dysplasia Inhibit 30591081
Dyslipidemias Associate 29283439