Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
9126
Gene name Gene Name - the full gene name approved by the HGNC.
Structural maintenance of chromosomes 3
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SMC3
Synonyms (NCBI Gene) Gene synonyms aliases
BAM, BMH, CDLS3, CSPG6, HCAP, SMC3L1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CDLS3
Chromosome Chromosome number
10
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
10q25.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene belongs to the SMC3 subfamily of SMC proteins. The encoded protein occurs in certain cell types as either an intracellular, nuclear protein or a secreted protein. The nuclear form, known as structural maintenance of chromosomes 3, is a component
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs587784425 G>A Likely-pathogenic Coding sequence variant, missense variant
rs587784427 G>C Likely-pathogenic Coding sequence variant, missense variant
rs587784429 G>A,C Likely-pathogenic Coding sequence variant, missense variant
rs727503775 TACAGGAACTT>- Pathogenic Coding sequence variant, intron variant, splice acceptor variant
rs748876063 C>G,T Likely-pathogenic Coding sequence variant, synonymous variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT019626 hsa-miR-340-5p Sequencing 20371350
MIRT026077 hsa-miR-196a-5p Sequencing 20371350
MIRT049364 hsa-miR-92a-3p CLASH 23622248
MIRT041357 hsa-miR-193b-3p CLASH 23622248
MIRT040180 hsa-miR-615-3p CLASH 23622248
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000278 Process Mitotic cell cycle TAS 9506951
GO:0000775 Component Chromosome, centromeric region TAS
GO:0000785 Component Chromatin IDA 16682347, 19907496
GO:0000800 Component Lateral element IEA
GO:0003682 Function Chromatin binding IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
606062 2468 ENSG00000108055
Protein
UniProt ID Q9UQE7
Protein name Structural maintenance of chromosomes protein 3 (SMC protein 3) (SMC-3) (Basement membrane-associated chondroitin proteoglycan) (Bamacan) (Chondroitin sulfate proteoglycan 6) (Chromosome-associated polypeptide) (hCAP)
Protein function Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissoc
PDB 6WG3 , 6WG4 , 6WG6 , 6WGE , 7W1M , 8P0A , 8PQ5 , 8ROH , 8ROI , 8ROJ , 8ROK , 8ROL
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02463 SMC_N 2 1197 RecF/RecN/SMC N terminal domain Domain
PF06470 SMC_hinge 529 643 SMC proteins Flexible Hinge Domain Domain
Sequence
MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND
VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMK
ETEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLD
ELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAERQEQIK
QRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSVKEKEER
GIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIAAIHKDL
EDTEANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKKDELQSERNYLWREENAEQ
QALAAKREDLEKKQQLLRAATGKAILNGIDSINKVLDHFRRKGINQHV
QNGYHGIVMNNF
ECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTAY
PETNDAIPMISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLA
RAFTMDCITLEGDQVSH
RGALTGGYYDTRKSRLELQKDVRKAEEELGELEAKLNENLRRNIERINNEIDQLMNQMQQ
IETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAE
LGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNERIKLEGIITRVETYLNENLRKRL
DQVEQELNELRETEGGTVLTATTSELEAINKRVKDTMARSEDLDNSIDKTEAGIKELQKS
MERWKNMEKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTL
SLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNV
LELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERG
SGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFY
LFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSH
IDV
ITAEMAKDFVEDDTTHG
Sequence length 1217
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Cell cycle
Oocyte meiosis
  Separation of Sister Chromatids
Establishment of Sister Chromatid Cohesion
Cohesin Loading onto Chromatin
Resolution of Sister Chromatid Cohesion
SUMOylation of DNA damage response and repair proteins
Estrogen-dependent gene expression
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Atrial septal defect Atrial Septal Defects rs137852951, rs137852953, rs137852955, rs267607106, rs104893900, rs104893901, rs104893903, rs606231358, rs606231359, rs137852683, rs606231360, rs104893907, rs104894073, rs1585703301, rs104894074
View all (25 more)
Attention deficit hyperactivity disorder Attention deficit hyperactivity disorder rs786205019
Autism Autistic Disorder rs121964908, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699
View all (8 more)
Brachydactyly Brachydactyly rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852
View all (22 more)
Unknown
Disease term Disease name Evidence References Source
Ptosis Blepharoptosis, Ptosis ClinVar
Cornelia De Lange Syndrome Cornelia de Lange syndrome GenCC
Associations from Text Mining
Disease Name Relationship Type References
Aneuploidy Associate 23455720
Ataxia Associate 25655089
Bone Diseases Associate 33397451
Carcinoma Hepatocellular Stimulate 36281130
Carcinoma Hepatocellular Associate 37204480
De Lange Syndrome Associate 17273969, 18996922, 19052029, 19701948, 20358602, 20448023, 22241092, 22857006, 22885700, 23106691, 24756084, 24918291, 25125236, 25574841, 25652421
View all (8 more)
Depression Postpartum Associate 25655089
Dermatitis Atopic Associate 33289509
Down Syndrome Associate 35587378, 35838049
Fractures Bone Associate 33397451