Gene Gene information from NCBI Gene database.
Entrez ID 91137
Gene name Solute carrier family 25 member 46
Gene symbol SLC25A46
Synonyms (NCBI Gene)
HMSN6BPCH1E
Chromosome 5
Chromosome location 5q22.1
Summary This gene encodes a mitochondrial solute carrier protein family member. It functions in promoting mitochondrial fission, and prevents the formation of hyperfilamentous mitochondria. Mutation of this gene results in neuropathy and optic atrophy. [provided
SNPs SNP information provided by dbSNP.
17
SNP ID Visualize variation Clinical significance Consequence
rs149585060 A>C Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, intron variant, non coding transcript variant
rs200725073 G>A,T Pathogenic Intron variant, missense variant, coding sequence variant, non coding transcript variant
rs202123515 C>A,T Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant, non coding transcript variant
rs746681765 C>A,T Pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs751900293 C>T Uncertain-significance, likely-pathogenic Non coding transcript variant, coding sequence variant, missense variant, intron variant
miRNA miRNA information provided by mirtarbase database.
228
miRTarBase ID miRNA Experiments Reference
MIRT027893 hsa-miR-96-5p Sequencing 20371350
MIRT037734 hsa-miR-744-5p CLASH 23622248
MIRT646632 hsa-miR-590-3p HITS-CLIP 23824327
MIRT646631 hsa-miR-2355-5p HITS-CLIP 23824327
MIRT646629 hsa-miR-6875-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
32
GO ID Ontology Definition Evidence Reference
GO:0000266 Process Mitochondrial fission IBA
GO:0000266 Process Mitochondrial fission IDA 26168012
GO:0000266 Process Mitochondrial fission IMP 27390132
GO:0000266 Process Mitochondrial fission IMP 27543974
GO:0000422 Process Autophagy of mitochondrion IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
610826 25198 ENSG00000164209
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96AG3
Protein name Mitochondrial outer membrane protein SLC25A46 (Solute carrier family 25 member 46)
Protein function Transmembrane protein of the mitochondrial outer membrane that controls mitochondrial organization (PubMed:26168012, PubMed:27390132, PubMed:27543974). May regulate the assembly of the MICOS (mitochondrial contact site and cristae organizing sys
PDB 8TMU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00153 Mito_carr 311 417 Mitochondrial carrier protein Family
Sequence
MHPRRPDGFDGLGYRGGARDEQGFGGAFPARSFSTGSDLGHWVTTPPDIPGSRNLHWGEK
SPPYGVPTTSTPYEGPTEEPFSSGGGGSVQGQSSEQLNRFAGFGIGLASLFTENVLAHPC
IVLRRQCQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGII
SEFTPLPREVLHKWSPKQIGEHLLLKSLTYVVAMPFYSASLIETVQSEIIRDNTGILECV
KEGIGRVIGMGVPHSKRLLPLLSLIFPTVLHGVLHYIISSVIQKFVLLILKRKTYNSHLA
ESTSPVQSMLDAYFPELIANFAASLCSDVILYPLETVLHRLHIQGTRTIIDNTDLGYEVL
PINTQYEGMRDCINTIRQEEGVFGFYKGFGAVIIQYTLHAAVLQITKIIYSTLLQNN
I
Sequence length 418
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
356
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Neuropathy, hereditary motor and sensory, type 6B Pathogenic; Likely pathogenic rs530045841, rs1561602892, rs1371249361, rs1799815535, rs2547519976, rs2547522906, rs2547528702, rs1278362025, rs1171977270, rs1057519416, rs1057518748, rs746681765, rs1057519295, rs1064795772, rs1554093168
View all (6 more)
RCV001377788
RCV001814770
RCV001937094
RCV001968984
RCV003152355
RCV003591258
RCV003591602
RCV003592145
RCV003881309
RCV003876994
RCV000412574
RCV000412520
RCV000412506
RCV000415596
RCV002526630
RCV000578393
RCV000677091
RCV000812026
RCV000987546
RCV001034962
RCV001208013
RCV001244721
Pontocerebellar hypoplasia, type 1E Pathogenic; Likely pathogenic rs751101419, rs771761288, rs1561602892, rs1057518749, rs1057518750, rs746681765, rs1057519294, rs1057519296, rs1064795772, rs1554093168, rs1799819389 RCV001380421
RCV001380424
RCV001814770
RCV000412554
RCV000412634
RCV003458425
RCV000415563
RCV000415525
RCV003458443
RCV001380423
RCV001380426
SLC25A46-associated optic atrophy spectrum disorder Likely pathogenic rs1580858058 RCV000791292
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Adrenocortical carcinoma, hereditary Benign; Likely benign rs151055603 RCV005897175
Charcot-Marie-Tooth disease Uncertain significance rs1390567933 RCV001027487
Clear cell carcinoma of kidney Benign; Likely benign rs151055603 RCV005897176
Colorectal cancer Benign; Likely benign rs151055603 RCV005897177
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Alzheimer Disease Associate 33878365
Ataxia Associate 30178502
Cerebellar Ataxia Associate 28558379
Cerebellar Diseases Associate 33985528
Charcot Marie Tooth disease X linked recessive 2 Associate 28558379
Eye Abnormalities Associate 28558379
Fused Kidney Associate 33985528
Leigh Disease Associate 27390132
Mitochondrial Diseases Associate 27390132, 33985528
Neurodegenerative Diseases Associate 27390132, 30178502, 36977595