Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
90353
Gene name Gene Name - the full gene name approved by the HGNC.
Cytosolic thiouridylase subunit 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CTU1
Synonyms (NCBI Gene) Gene synonyms aliases
ATPBD3, NCS6
Chromosome Chromosome number
19
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
19q13.41
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT618039 hsa-miR-1250-3p HITS-CLIP 23824327
MIRT618038 hsa-miR-153-5p HITS-CLIP 23824327
MIRT618037 hsa-miR-6748-3p HITS-CLIP 23824327
MIRT618036 hsa-miR-4421 HITS-CLIP 23824327
MIRT618035 hsa-miR-5699-3p HITS-CLIP 23824327
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000049 Function TRNA binding IBA 21873635
GO:0002098 Process TRNA wobble uridine modification NAS 19017811
GO:0002143 Process TRNA wobble position uridine thiolation IBA 21873635
GO:0002144 Component Cytosolic tRNA wobble base thiouridylase complex IBA 21873635
GO:0005515 Function Protein binding IPI 19017811, 21209336
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
612694 29590 ENSG00000142544
Protein
UniProt ID Q7Z7A3
Protein name Cytoplasmic tRNA 2-thiolation protein 1 (EC 2.7.7.-) (ATP-binding domain-containing protein 3) (Cancer-associated gene protein) (Cytoplasmic tRNA adenylyltransferase 1)
Protein function Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is uncle
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01171 ATP_bind_3 53 250 PP-loop family Family
PF16503 zn-ribbon_14 285 316 Zinc-ribbon Family
Sequence
Sequence length 348
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Sulfur relay system   tRNA modification in the nucleus and cytosol
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Breast cancer Malignant neoplasm of breast rs587776547, rs1137887, rs137853007, rs587776650, rs80359351, rs80359714, rs121917783, rs104886456, rs121964878, rs80359874, rs80357868, rs80357508, rs387906843, rs80357569, rs80358158
View all (309 more)
27811057
Breast carcinoma Breast Carcinoma rs80359671, rs11540652, rs28934575, rs28897672, rs137886232, rs193922376, rs80357783, rs80359306, rs80359405, rs80359507, rs80359598, rs80358429, rs397507683, rs397515636, rs80359451
View all (71 more)
27811057
Marfan syndrome Mammary Carcinoma, Human rs137854456, rs137854457, rs267606796, rs137854458, rs137854459, rs137854460, rs137854470, rs137854471, rs267606797, rs137854461, rs137854462, rs137854463, rs869025419, rs137854464, rs137854465
View all (942 more)
27811057
Unknown
Disease term Disease name Evidence References Source
Oligodendroglioma Oligodendroglioma GWAS
Associations from Text Mining
Disease Name Relationship Type References
Ependymoma Associate 31822682
Neuroblastoma Associate 34879089