Gene Gene information from NCBI Gene database.
Entrez ID 90196
Gene name SYS1 golgi trafficking protein
Gene symbol SYS1
Synonyms (NCBI Gene)
C20orf169dJ453C12.4dJ453C12.4.1
Chromosome 20
Chromosome location 20q13.12
Summary SYS1 forms a complex with ADP-ribosylation factor-related protein ARFRP1 (MIM 604699) and targets ARFRP1 to the Golgi apparatus (Behnia et al., 2004 [PubMed 15077113]).[supplied by OMIM, Aug 2009]
miRNA miRNA information provided by mirtarbase database.
341
miRTarBase ID miRNA Experiments Reference
MIRT026991 hsa-miR-103a-3p Sequencing 20371350
MIRT1407025 hsa-miR-134 CLIP-seq
MIRT1407026 hsa-miR-3118 CLIP-seq
MIRT1407027 hsa-miR-3160-3p CLIP-seq
MIRT1407028 hsa-miR-3164 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
12
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IBA
GO:0000139 Component Golgi membrane IEA
GO:0005515 Function Protein binding IPI 32296183
GO:0005794 Component Golgi apparatus IEA
GO:0005802 Component Trans-Golgi network IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
612979 16162 ENSG00000204070
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8N2H4
Protein name Protein SYS1 homolog
Protein function Involved in protein trafficking. May serve as a receptor for ARFRP1.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF09801 SYS1 5 148 Integral membrane protein S linking to the trans Golgi network Family
Sequence
Sequence length 156
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Retrograde transport at the Trans-Golgi-Network
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
2
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
MULTIPLE SCLEROSIS CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
PSORIASIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References Evidence Score
Atrophy Associate 33319642
★☆☆☆☆
Found in Text Mining only
Fibrosis Associate 33319642
★☆☆☆☆
Found in Text Mining only
Glomerulonephritis IGA Associate 33319642
★☆☆☆☆
Found in Text Mining only
Scleroderma Systemic Stimulate 31804582
★☆☆☆☆
Found in Text Mining only