Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
9015
Gene name Gene Name - the full gene name approved by the HGNC.
TATA-box binding protein associated factor, RNA polymerase I subunit A
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TAF1A
Synonyms (NCBI Gene) Gene synonyms aliases
MGC:17061, RAFI48, SL1, TAFI48
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q41
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a subunit of the RNA polymerase I complex, Selectivity Factor I (SLI). The encoded protein is a TATA box-binding protein-associated factor that plays a role in the assembly of the RNA polymerase I preinitiation complex. Alternate splicin
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT022398 hsa-miR-124-3p Microarray 18668037
MIRT1409185 hsa-miR-1224-3p CLIP-seq
MIRT1409186 hsa-miR-1234 CLIP-seq
MIRT1409187 hsa-miR-150 CLIP-seq
MIRT1409188 hsa-miR-302a CLIP-seq
Transcription factors
Transcription factor Regulation Reference
NPM1 Activation 17069796
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000120 Component RNA polymerase I transcription regulator complex IEA
GO:0003677 Function DNA binding IEA
GO:0005515 Function Protein binding IPI 17318177, 20075868, 25416956, 26496610
GO:0005654 Component Nucleoplasm IDA
GO:0005654 Component Nucleoplasm TAS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
604903 11532 ENSG00000143498
Protein
UniProt ID Q15573
Protein name TATA box-binding protein-associated factor RNA polymerase I subunit A (RNA polymerase I-specific TBP-associated factor 48 kDa) (TAFI48) (TATA box-binding protein-associated factor 1A) (TBP-associated factor 1A) (Transcription factor SL1) (Transcription in
Protein function Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (pre-initiation complex) during RNA polymerase I-dependent transcription. The rate of PIC formation probably is primarily dependent on the rat
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF14929 TAF1_subA 63 423 TAF RNA Polymerase I subunit A Family
Sequence
Sequence length 450
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Transcription Termination
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Cardiomyopathy Cardiomyopathy, Dilated, Familial dilated cardiomyopathy rs267607003, rs267607002, rs267607004, rs63750743, rs121908333, rs121908334, rs104894655, rs121434420, rs121434421, rs193922674, rs111517471, rs121908987, rs193922384, rs121909374, rs121909377
View all (900 more)
28472305
Dilated cardiomyopathy Familial isolated dilated cardiomyopathy rs267607003, rs267607001, rs267607002, rs267607004, rs119463990, rs587777748, rs119463991, rs119463993, rs119464997, rs267606814, rs121908334, rs121909304, rs1369919728, rs121909295, rs121909297
View all (396 more)
Hearing loss Sensorineural Hearing Loss (disorder) rs267607135, rs267606855, rs779841884, rs267606854, rs28942097, rs121908073, rs121908076, rs74315289, rs121908144, rs111033313, rs74315437, rs121908348, rs121908349, rs121908350, rs397515359
View all (184 more)
Lipodystrophy Lipodystrophy rs553668, rs766817317
Unknown
Disease term Disease name Evidence References Source
Dilated Cardiomyopathy familial isolated dilated cardiomyopathy GenCC
Associations from Text Mining
Disease Name Relationship Type References
Breast Neoplasms Associate 29510897
Cardiomyopathies Associate 39209150
Cardiomyopathy Restrictive Associate 39209150
Colonic Neoplasms Associate 32522293
Drug Related Side Effects and Adverse Reactions Associate 20041693
Dystonic Disorders Associate 39209150
Hypersensitivity Immediate Associate 39369230
Infections Associate 33669411
Neoplasm Metastasis Associate 29510897
Neoplasms Associate 29510897