Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene SNPs miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	90121
Gene name Gene Name - the full gene name approved by the HGNC.	TSR2 ribosome maturation factor
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	TSR2
Synonyms (NCBI Gene) Gene synonyms aliases	DBA14, DT1P1A10, WGG1
Chromosome Chromosome number	X
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	Xp11.22
Summary Summary of gene provided in NCBI Entrez Gene.	The protein encoded by this gene appears to repress the transcription of NF-kappaB and may be involved in apoptosis. Defects in this gene are a cause of Diamond-Blackfan anemia. [provided by RefSeq, Oct 2016]

Show/Hide all(1)

SNP ID	Visualize variation	Clinical significance	Consequence
rs786203996	A>G	Pathogenic	Missense variant, 5 prime UTR variant, coding sequence variant

Show/Hide all(108)

miRTarBase ID	miRNA	Experiments	Reference
MIRT022680	hsa-miR-124-3p	Microarray	18668037
MIRT036048	hsa-miR-1301-3p	CLASH	23622248
MIRT1460536	hsa-miR-1207-5p	CLIP-seq
MIRT1460537	hsa-miR-147	CLIP-seq
MIRT1460538	hsa-miR-1909	CLIP-seq
MIRT1460539	hsa-miR-2110	CLIP-seq
MIRT1460540	hsa-miR-2467-5p	CLIP-seq
MIRT1460541	hsa-miR-3127-3p	CLIP-seq
MIRT1460542	hsa-miR-3151	CLIP-seq
MIRT1460543	hsa-miR-342-5p	CLIP-seq
MIRT1460544	hsa-miR-3667-3p	CLIP-seq
MIRT1460545	hsa-miR-3911	CLIP-seq
MIRT1460546	hsa-miR-4271	CLIP-seq
MIRT1460547	hsa-miR-4447	CLIP-seq
MIRT1460548	hsa-miR-4472	CLIP-seq
MIRT1460549	hsa-miR-4475	CLIP-seq
MIRT1460550	hsa-miR-4651	CLIP-seq
MIRT1460551	hsa-miR-4664-5p	CLIP-seq
MIRT1460552	hsa-miR-4667-5p	CLIP-seq
MIRT1460553	hsa-miR-4700-5p	CLIP-seq
MIRT1460554	hsa-miR-4725-3p	CLIP-seq
MIRT1460555	hsa-miR-4763-3p	CLIP-seq
MIRT1460556	hsa-miR-4797-5p	CLIP-seq
MIRT1460557	hsa-miR-491-5p	CLIP-seq
MIRT1460558	hsa-miR-520a-5p	CLIP-seq
MIRT1460559	hsa-miR-525-5p	CLIP-seq
MIRT1460560	hsa-miR-555	CLIP-seq
MIRT1460561	hsa-miR-608	CLIP-seq
MIRT1460562	hsa-miR-644	CLIP-seq
MIRT1460563	hsa-miR-668	CLIP-seq
MIRT1460564	hsa-miR-941	CLIP-seq
MIRT2138275	hsa-miR-1252	CLIP-seq
MIRT2138276	hsa-miR-1298	CLIP-seq
MIRT2138277	hsa-miR-1587	CLIP-seq
MIRT1460539	hsa-miR-2110	CLIP-seq
MIRT2138278	hsa-miR-23a	CLIP-seq
MIRT2138279	hsa-miR-23b	CLIP-seq
MIRT2138280	hsa-miR-23c	CLIP-seq
MIRT1460540	hsa-miR-2467-5p	CLIP-seq
MIRT2138281	hsa-miR-378g	CLIP-seq
MIRT1460546	hsa-miR-4271	CLIP-seq
MIRT1460549	hsa-miR-4475	CLIP-seq
MIRT2138282	hsa-miR-4476	CLIP-seq
MIRT2138283	hsa-miR-4492	CLIP-seq
MIRT2138284	hsa-miR-4498	CLIP-seq
MIRT2138285	hsa-miR-4505	CLIP-seq
MIRT2138286	hsa-miR-4656	CLIP-seq
MIRT1460552	hsa-miR-4667-5p	CLIP-seq
MIRT2138287	hsa-miR-4675	CLIP-seq
MIRT1460553	hsa-miR-4700-5p	CLIP-seq
MIRT1460554	hsa-miR-4725-3p	CLIP-seq
MIRT2138288	hsa-miR-4741	CLIP-seq
MIRT2138289	hsa-miR-485-5p	CLIP-seq
MIRT1460558	hsa-miR-520a-5p	CLIP-seq
MIRT1460559	hsa-miR-525-5p	CLIP-seq
MIRT1460560	hsa-miR-555	CLIP-seq
MIRT2138290	hsa-miR-762	CLIP-seq
MIRT1460564	hsa-miR-941	CLIP-seq
MIRT2359188	hsa-miR-1236	CLIP-seq
MIRT2138276	hsa-miR-1298	CLIP-seq
MIRT2359189	hsa-miR-1305	CLIP-seq
MIRT2138278	hsa-miR-23a	CLIP-seq
MIRT2138279	hsa-miR-23b	CLIP-seq
MIRT2138280	hsa-miR-23c	CLIP-seq
MIRT2359190	hsa-miR-3125	CLIP-seq
MIRT1460541	hsa-miR-3127-3p	CLIP-seq
MIRT1460544	hsa-miR-3667-3p	CLIP-seq
MIRT2359191	hsa-miR-3916	CLIP-seq
MIRT2359192	hsa-miR-4436b-5p	CLIP-seq
MIRT1460563	hsa-miR-668	CLIP-seq
MIRT2652412	hsa-miR-1278	CLIP-seq
MIRT2652413	hsa-miR-1911	CLIP-seq
MIRT2652414	hsa-miR-3120-3p	CLIP-seq
MIRT1460541	hsa-miR-3127-3p	CLIP-seq
MIRT2652415	hsa-miR-3183	CLIP-seq
MIRT2652416	hsa-miR-3194-5p	CLIP-seq
MIRT2652417	hsa-miR-34c-3p	CLIP-seq
MIRT1460544	hsa-miR-3667-3p	CLIP-seq
MIRT2652418	hsa-miR-3680	CLIP-seq
MIRT2652419	hsa-miR-3943	CLIP-seq
MIRT2652420	hsa-miR-4268	CLIP-seq
MIRT2652421	hsa-miR-4279	CLIP-seq
MIRT2652422	hsa-miR-4313	CLIP-seq
MIRT2652423	hsa-miR-4420	CLIP-seq
MIRT2652424	hsa-miR-4691-3p	CLIP-seq
MIRT2652425	hsa-miR-4691-5p	CLIP-seq
MIRT2652426	hsa-miR-4723-3p	CLIP-seq
MIRT2652427	hsa-miR-4773	CLIP-seq
MIRT2652428	hsa-miR-545	CLIP-seq
MIRT2652429	hsa-miR-549	CLIP-seq
MIRT2652430	hsa-miR-766	CLIP-seq
MIRT2652412	hsa-miR-1278	CLIP-seq
MIRT2652413	hsa-miR-1911	CLIP-seq
MIRT1460541	hsa-miR-3127-3p	CLIP-seq
MIRT2652415	hsa-miR-3183	CLIP-seq
MIRT2652416	hsa-miR-3194-5p	CLIP-seq
MIRT2652417	hsa-miR-34c-3p	CLIP-seq
MIRT1460544	hsa-miR-3667-3p	CLIP-seq
MIRT2652418	hsa-miR-3680	CLIP-seq
MIRT2652419	hsa-miR-3943	CLIP-seq
MIRT2652420	hsa-miR-4268	CLIP-seq
MIRT2652421	hsa-miR-4279	CLIP-seq
MIRT2652422	hsa-miR-4313	CLIP-seq
MIRT2652423	hsa-miR-4420	CLIP-seq
MIRT2652424	hsa-miR-4691-3p	CLIP-seq
MIRT2652425	hsa-miR-4691-5p	CLIP-seq
MIRT2652426	hsa-miR-4723-3p	CLIP-seq
MIRT2652430	hsa-miR-766	CLIP-seq

Show/Hide all(4)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000462	Process	Maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IBA
GO:0005515	Function	Protein binding	IPI	16189514, 19060904, 20562859, 25416956, 32296183, 35271311
GO:0005634	Component	Nucleus	IBA
GO:0006364	Process	RRNA processing	IEA

MIM	HGNC	e!Ensembl
300945	25455	ENSG00000158526

Protein

UniProt ID

Q969E8

Protein name

Pre-rRNA-processing protein TSR2 homolog

Protein function

May be involved in 20S pre-rRNA processing.

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF10273	WGG	12 → 91	Pre-rRNA-processing protein TSR2	Family

Sequence

MAGAAEDARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNADL
ELDEVEDFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKC
KVTATALKTARETDEDEDDVDSVEEMEVTATNDGAATDGVCPQPEPSDPDAQTIKEEDIV
EDGWTIVRRKK

Sequence length

191

Interactions

View interactions

Show/Hide Causal Diseases (1)

Disease merge term	Disease name	dbSNP ID	References
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Diamond-Blackfan Anemia With Mandibulofacial Dysostosis	diamond-blackfan anemia 15 with mandibulofacial dysostosis	rs786203996	N/A

Show/Hide Unknown Diseases (2)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Anemia	Diamond-Blackfan anemia	N/A	N/A	GenCC
Prostate cancer	Prostate cancer	N/A	N/A	GWAS

Show/Hide Text Mining Associations (3)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Anemia Diamond Blackfan	Associate	24942156, 30201955
Lupus Erythematosus Systemic	Associate	35864995
Mandibulofacial Dysostosis	Associate	24942156

TSR2 (TSR2 ribosome maturation factor)