Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
8991
Gene name Gene Name - the full gene name approved by the HGNC.
Selenium binding protein 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SELENBP1
Synonyms (NCBI Gene) Gene synonyms aliases
EHMTO, HEL-S-134P, LPSB, MTO, SBP56, SP56, hSBP
Disease Acronyms (UniProt) Disease acronyms from UniProt database
EHMTO
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q21.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the selenium-binding protein family. Selenium is an essential nutrient that exhibits potent anticarcinogenic properties, and deficiency of selenium may cause certain neurologic diseases. The effects of selenium in preventing
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs758495626 C>A,T Pathogenic, likely-pathogenic Intron variant, coding sequence variant, missense variant
rs1357490520 C>A,T Pathogenic Splice donor variant
rs1553204817 C>A Likely-pathogenic, pathogenic Non coding transcript variant, coding sequence variant, stop gained
rs1553204840 G>A Likely-pathogenic, pathogenic Non coding transcript variant, coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT017378 hsa-miR-335-5p Microarray 18185580
MIRT029152 hsa-miR-26b-5p Microarray 19088304
MIRT050594 hsa-miR-20a-5p CLASH 23622248
MIRT049678 hsa-miR-92a-3p CLASH 23622248
MIRT1334251 hsa-miR-128 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001650 Component Fibrillar center IDA
GO:0005515 Function Protein binding IPI 16189514, 19118533, 29892012, 31515488, 32296183
GO:0005615 Component Extracellular space HDA 16502470
GO:0005730 Component Nucleolus IDA
GO:0005829 Component Cytosol IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
604188 10719 ENSG00000143416
Protein
UniProt ID Q13228
Protein name Methanethiol oxidase (MTO) (EC 1.8.3.4) (56 kDa selenium-binding protein) (SBP56) (SP56) (Selenium-binding protein 1)
Protein function Catalyzes the oxidation of methanethiol, an organosulfur compound known to be produced in substantial amounts by gut bacteria (PubMed:29255262). Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytopla
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05694 SBP56 6 472 56kDa selenium binding protein (SBP56) Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed. Highly expressed in liver, lung, colon, prostate, kidney and pancreas. In brain, present both in neurons and glia (at protein level). Down-regulated in lung adenocarcinoma, colorectal carcinoma and ovarian cancer. Two
Sequence
Sequence length 472
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  Sulfur metabolism
Metabolic pathways
 
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Adenocarcinoma Adenocarcinoma, Adenocarcinoma, Basal Cell, Adenocarcinoma, Oxyphilic, Adenocarcinoma, Tubular rs121913530, rs886039394, rs121913474 14991897, 15378696
Carcinoma Carcinoma, Cribriform, Carcinoma, Granular Cell rs121912654, rs555607708, rs786202962, rs1564055259 15378696, 14991897
Colorectal cancer Colorectal Carcinoma rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
18435490
Colorectal neoplasms Colorectal Neoplasms rs28929483, rs63751108, rs28929484, rs63749831, rs63750047, rs63751207, rs63749811, rs1553350126, rs63750875, rs63750955, rs587776706, rs63750871, rs587776715, rs63751466, rs63750049
View all (1682 more)
18435490
Unknown
Disease term Disease name Evidence References Source
Extra-Oral Halitosis autosomal recessive extra-oral halitosis GenCC
Diabetes Diabetes GWAS
Myocardial Infarction Myocardial Infarction GWAS
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma Inhibit 20332323
Adenocarcinoma Bronchiolo Alveolar Inhibit 14991897
Adenocarcinoma of Lung Associate 14991897, 34734491, 35205284
Arthritis Rheumatoid Associate 24764015
Barrett Esophagus Inhibit 20332323
Beta ketothiolase deficiency Inhibit 14991897
Bradycardia Associate 31450690
Brain Diseases Associate 33603109
Breast Neoplasms Inhibit 23704933
Bronchial Diseases Associate 23977169