Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
8898
Gene name Gene Name - the full gene name approved by the HGNC.
Myotubularin related protein 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
MTMR2
Synonyms (NCBI Gene) Gene synonyms aliases
CMT4B, CMT4B1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CMT4B1
Chromosome Chromosome number
11
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
11q21
Summary Summary of gene provided in NCBI Entrez Gene.
This gene is a member of the myotubularin family of phosphoinositide lipid phosphatases. The encoded protein possesses phosphatase activity towards phosphatidylinositol-3-phosphate and phosphatidylinositol-3,5-bisphosphate. Mutations in this gene are a ca
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121434402 G>A Pathogenic Coding sequence variant, stop gained
rs121434403 C>A,T Pathogenic Coding sequence variant, stop gained, missense variant
rs121434404 G>A Pathogenic Coding sequence variant, stop gained
rs146572467 C>T Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, missense variant
rs200083635 A>G Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT047348 hsa-miR-34a-5p CLASH 23622248
MIRT1163895 hsa-miR-105 CLIP-seq
MIRT1163896 hsa-miR-1261 CLIP-seq
MIRT1163897 hsa-miR-146b-3p CLIP-seq
MIRT1163898 hsa-miR-21 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0002091 Process Negative regulation of receptor internalization ISS
GO:0004438 Function Phosphatidylinositol-3-phosphatase activity IBA 21873635
GO:0004438 Function Phosphatidylinositol-3-phosphatase activity IDA 12668758
GO:0004725 Function Protein tyrosine phosphatase activity IEA
GO:0005515 Function Protein binding IPI 12837694, 15998640
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
603557 7450 ENSG00000087053
Protein
UniProt ID Q13614
Protein name Phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR2 (EC 3.1.3.95) (Myotubularin-related protein 2) (Phosphatidylinositol-3-phosphate phosphatase)
Protein function Lipid phosphatase that specifically dephosphorylates the D-3 position of phosphatidylinositol 3-phosphate and phosphatidylinositol 3,5-bisphosphate, generating phosphatidylinositol and phosphatidylinositol 5-phosphate (PubMed:11733541, PubMed:12
PDB 1LW3 , 1M7R , 1ZSQ , 1ZVR , 5GNH
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02893 GRAM 68 185 GRAM domain Domain
PF06602 Myotub-related 192 529 Myotubularin-like phosphatase domain Domain
Sequence
Sequence length 643
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Inositol phosphate metabolism
Metabolic pathways
Phosphatidylinositol signaling system
  Synthesis of PIPs at the ER membrane
Synthesis of PIPs at the early endosome membrane
Synthesis of PIPs at the late endosome membrane
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Charcot-marie-tooth disease Charcot-Marie-Tooth disease, Type 4B1, Charcot-Marie-Tooth disease type 4, Charcot-Marie-Tooth disease type 4B1 rs137852739, rs137852737, rs118203972, rs118203974, rs267607183, rs267606878, rs121908287, rs1562648373, rs121908288, rs1368013631, rs28940291, rs28940292, rs28940293, rs28940294, rs28940295
View all (1137 more)
28509084, 12398840, 10802647
Scoliosis Scoliosis, unspecified rs1057518828, rs147296805, rs758163506, rs1555613564, rs1596852902, rs1596853067, rs1596853085
Unknown
Disease term Disease name Evidence References Source
Distal amyotrophy Distal amyotrophy ClinVar
Sensory neuropathy demyelinating hereditary motor and sensory neuropathy GenCC
Associations from Text Mining
Disease Name Relationship Type References
Carcinoma Hepatocellular Associate 35560794, 37907649
Charcot Marie Tooth Disease Associate 14690594
Charcot Marie Tooth disease Type 4B1 Associate 12646134, 12687498, 15998640, 21372139, 31070812
Demyelinating Diseases Associate 12646134
Foot Deformities Associate 21840889
Hereditary Sensory and Motor Neuropathy Associate 21840889
Lymphatic Metastasis Associate 31113461
Lymphoma T Cell Associate 32767332
Myopathies Structural Congenital Associate 12687498, 14690594, 36161941
Neoplasm Metastasis Associate 31113461