Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	8859
Gene name Gene Name - the full gene name approved by the HGNC.	Winged helix repair factor 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	WHR1
Synonyms (NCBI Gene) Gene synonyms aliases	D6S60, D6S60E, G11, HLA-RP1, RP1, STK19, TWH19
Disease Acronyms (UniProt) Disease acronyms from UniProt database	RP1
Chromosome Chromosome number	6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	6p21.33

Show/Hide all(193)

miRTarBase ID	miRNA	Experiments	Reference
MIRT044241	hsa-miR-29c-3p	CLASH	23622248
MIRT1397463	hsa-miR-1271	CLIP-seq
MIRT1397464	hsa-miR-15a	CLIP-seq
MIRT1397465	hsa-miR-15b	CLIP-seq
MIRT1397466	hsa-miR-16	CLIP-seq
MIRT1397467	hsa-miR-182	CLIP-seq
MIRT1397468	hsa-miR-195	CLIP-seq
MIRT1397469	hsa-miR-2467-3p	CLIP-seq
MIRT1397470	hsa-miR-3143	CLIP-seq
MIRT1397471	hsa-miR-424	CLIP-seq
MIRT1397472	hsa-miR-4256	CLIP-seq
MIRT1397473	hsa-miR-4257	CLIP-seq
MIRT1397474	hsa-miR-4274	CLIP-seq
MIRT1397475	hsa-miR-4514	CLIP-seq
MIRT1397476	hsa-miR-4692	CLIP-seq
MIRT1397477	hsa-miR-4704-3p	CLIP-seq
MIRT1397478	hsa-miR-497	CLIP-seq
MIRT1397479	hsa-miR-513a-5p	CLIP-seq
MIRT1397480	hsa-miR-590-3p	CLIP-seq
MIRT1397481	hsa-miR-96	CLIP-seq
MIRT1397464	hsa-miR-15a	CLIP-seq
MIRT1397465	hsa-miR-15b	CLIP-seq
MIRT1397466	hsa-miR-16	CLIP-seq
MIRT1397468	hsa-miR-195	CLIP-seq
MIRT1397471	hsa-miR-424	CLIP-seq
MIRT1397474	hsa-miR-4274	CLIP-seq
MIRT1397482	hsa-miR-4470	CLIP-seq
MIRT1397483	hsa-miR-4645-5p	CLIP-seq
MIRT1397484	hsa-miR-4673	CLIP-seq
MIRT1397477	hsa-miR-4704-3p	CLIP-seq
MIRT1397485	hsa-miR-4742-5p	CLIP-seq
MIRT1397478	hsa-miR-497	CLIP-seq
MIRT2341323	hsa-miR-1226	CLIP-seq
MIRT2341324	hsa-miR-1272	CLIP-seq
MIRT2341325	hsa-miR-1277	CLIP-seq
MIRT1397464	hsa-miR-15a	CLIP-seq
MIRT1397465	hsa-miR-15b	CLIP-seq
MIRT1397466	hsa-miR-16	CLIP-seq
MIRT1397468	hsa-miR-195	CLIP-seq
MIRT2341326	hsa-miR-197	CLIP-seq
MIRT2341327	hsa-miR-205	CLIP-seq
MIRT2341328	hsa-miR-28-5p	CLIP-seq
MIRT2341329	hsa-miR-3123	CLIP-seq
MIRT2341330	hsa-miR-3133	CLIP-seq
MIRT2341331	hsa-miR-3139	CLIP-seq
MIRT2341332	hsa-miR-3150b-3p	CLIP-seq
MIRT2341333	hsa-miR-3160-3p	CLIP-seq
MIRT2341334	hsa-miR-3908	CLIP-seq
MIRT2341335	hsa-miR-3921	CLIP-seq
MIRT2341336	hsa-miR-3925-5p	CLIP-seq
MIRT2341337	hsa-miR-412	CLIP-seq
MIRT1397471	hsa-miR-424	CLIP-seq
MIRT1397474	hsa-miR-4274	CLIP-seq
MIRT2341338	hsa-miR-4290	CLIP-seq
MIRT2341339	hsa-miR-4462	CLIP-seq
MIRT1397482	hsa-miR-4470	CLIP-seq
MIRT1397483	hsa-miR-4645-5p	CLIP-seq
MIRT2341340	hsa-miR-4649-3p	CLIP-seq
MIRT2341341	hsa-miR-4653-5p	CLIP-seq
MIRT2341342	hsa-miR-4663	CLIP-seq
MIRT2341343	hsa-miR-4667-3p	CLIP-seq
MIRT1397484	hsa-miR-4673	CLIP-seq
MIRT2341344	hsa-miR-4689	CLIP-seq
MIRT1397477	hsa-miR-4704-3p	CLIP-seq
MIRT2341345	hsa-miR-4714-5p	CLIP-seq
MIRT2341346	hsa-miR-4733-3p	CLIP-seq
MIRT1397485	hsa-miR-4742-5p	CLIP-seq
MIRT2341347	hsa-miR-4784	CLIP-seq
MIRT1397478	hsa-miR-497	CLIP-seq
MIRT2341348	hsa-miR-548b-3p	CLIP-seq
MIRT2341349	hsa-miR-708	CLIP-seq
MIRT2635296	hsa-miR-10a	CLIP-seq
MIRT2635297	hsa-miR-10b	CLIP-seq
MIRT2635298	hsa-miR-1178	CLIP-seq
MIRT2635299	hsa-miR-1224-3p	CLIP-seq
MIRT2341323	hsa-miR-1226	CLIP-seq
MIRT2635300	hsa-miR-1260	CLIP-seq
MIRT2635301	hsa-miR-1260b	CLIP-seq
MIRT1397463	hsa-miR-1271	CLIP-seq
MIRT2341325	hsa-miR-1277	CLIP-seq
MIRT2635302	hsa-miR-1280	CLIP-seq
MIRT2635303	hsa-miR-1301	CLIP-seq
MIRT2635304	hsa-miR-149	CLIP-seq
MIRT2635305	hsa-miR-150	CLIP-seq
MIRT2341326	hsa-miR-197	CLIP-seq
MIRT2341327	hsa-miR-205	CLIP-seq
MIRT2635306	hsa-miR-2114	CLIP-seq
MIRT2635307	hsa-miR-2355-5p	CLIP-seq
MIRT2341328	hsa-miR-28-5p	CLIP-seq
MIRT2635308	hsa-miR-29a	CLIP-seq
MIRT2635309	hsa-miR-29b	CLIP-seq
MIRT2635310	hsa-miR-29c	CLIP-seq
MIRT2635311	hsa-miR-3065-3p	CLIP-seq
MIRT2341329	hsa-miR-3123	CLIP-seq
MIRT2341330	hsa-miR-3133	CLIP-seq
MIRT2341331	hsa-miR-3139	CLIP-seq
MIRT2341332	hsa-miR-3150b-3p	CLIP-seq
MIRT2635312	hsa-miR-3157-5p	CLIP-seq
MIRT2341333	hsa-miR-3160-3p	CLIP-seq
MIRT2635313	hsa-miR-3202	CLIP-seq
MIRT2635314	hsa-miR-337-3p	CLIP-seq
MIRT2635315	hsa-miR-339-5p	CLIP-seq
MIRT2635316	hsa-miR-3614-3p	CLIP-seq
MIRT2635317	hsa-miR-3667-3p	CLIP-seq
MIRT2635318	hsa-miR-371-5p	CLIP-seq
MIRT2635319	hsa-miR-3919	CLIP-seq
MIRT2341335	hsa-miR-3921	CLIP-seq
MIRT2341336	hsa-miR-3925-5p	CLIP-seq
MIRT2341337	hsa-miR-412	CLIP-seq
MIRT2341338	hsa-miR-4290	CLIP-seq
MIRT2635320	hsa-miR-4297	CLIP-seq
MIRT2635321	hsa-miR-4421	CLIP-seq
MIRT2635322	hsa-miR-4436b-3p	CLIP-seq
MIRT2635323	hsa-miR-4436b-5p	CLIP-seq
MIRT2341339	hsa-miR-4462	CLIP-seq
MIRT2635324	hsa-miR-4533	CLIP-seq
MIRT1397483	hsa-miR-4645-5p	CLIP-seq
MIRT2341340	hsa-miR-4649-3p	CLIP-seq
MIRT2341341	hsa-miR-4653-5p	CLIP-seq
MIRT2635325	hsa-miR-4660	CLIP-seq
MIRT2341342	hsa-miR-4663	CLIP-seq
MIRT2341343	hsa-miR-4667-3p	CLIP-seq
MIRT1397484	hsa-miR-4673	CLIP-seq
MIRT2341344	hsa-miR-4689	CLIP-seq
MIRT2635326	hsa-miR-4691-3p	CLIP-seq
MIRT2341345	hsa-miR-4714-5p	CLIP-seq
MIRT2635327	hsa-miR-4725-5p	CLIP-seq
MIRT2341346	hsa-miR-4733-3p	CLIP-seq
MIRT1397485	hsa-miR-4742-5p	CLIP-seq
MIRT2635328	hsa-miR-4761-5p	CLIP-seq
MIRT2341347	hsa-miR-4784	CLIP-seq
MIRT2635329	hsa-miR-4793-5p	CLIP-seq
MIRT2635330	hsa-miR-4797-5p	CLIP-seq
MIRT2635331	hsa-miR-498	CLIP-seq
MIRT2635332	hsa-miR-504	CLIP-seq
MIRT2635333	hsa-miR-5047	CLIP-seq
MIRT2341348	hsa-miR-548b-3p	CLIP-seq
MIRT2635334	hsa-miR-554	CLIP-seq
MIRT2635335	hsa-miR-587	CLIP-seq
MIRT2635336	hsa-miR-605	CLIP-seq
MIRT2341349	hsa-miR-708	CLIP-seq
MIRT2635337	hsa-miR-767-5p	CLIP-seq
MIRT1397481	hsa-miR-96	CLIP-seq
MIRT2635296	hsa-miR-10a	CLIP-seq
MIRT2635297	hsa-miR-10b	CLIP-seq
MIRT2635298	hsa-miR-1178	CLIP-seq
MIRT2635299	hsa-miR-1224-3p	CLIP-seq
MIRT2341323	hsa-miR-1226	CLIP-seq
MIRT2635300	hsa-miR-1260	CLIP-seq
MIRT2635301	hsa-miR-1260b	CLIP-seq
MIRT2341325	hsa-miR-1277	CLIP-seq
MIRT2635302	hsa-miR-1280	CLIP-seq
MIRT2635304	hsa-miR-149	CLIP-seq
MIRT2635305	hsa-miR-150	CLIP-seq
MIRT2341326	hsa-miR-197	CLIP-seq
MIRT2341327	hsa-miR-205	CLIP-seq
MIRT2635307	hsa-miR-2355-5p	CLIP-seq
MIRT2635308	hsa-miR-29a	CLIP-seq
MIRT2635309	hsa-miR-29b	CLIP-seq
MIRT2635310	hsa-miR-29c	CLIP-seq
MIRT2635311	hsa-miR-3065-3p	CLIP-seq
MIRT2341329	hsa-miR-3123	CLIP-seq
MIRT2341330	hsa-miR-3133	CLIP-seq
MIRT2635312	hsa-miR-3157-5p	CLIP-seq
MIRT2635313	hsa-miR-3202	CLIP-seq
MIRT2635314	hsa-miR-337-3p	CLIP-seq
MIRT2635315	hsa-miR-339-5p	CLIP-seq
MIRT2635316	hsa-miR-3614-3p	CLIP-seq
MIRT2635317	hsa-miR-3667-3p	CLIP-seq
MIRT2635318	hsa-miR-371-5p	CLIP-seq
MIRT2635319	hsa-miR-3919	CLIP-seq
MIRT2341336	hsa-miR-3925-5p	CLIP-seq
MIRT2341337	hsa-miR-412	CLIP-seq
MIRT2341338	hsa-miR-4290	CLIP-seq
MIRT2635320	hsa-miR-4297	CLIP-seq
MIRT2635321	hsa-miR-4421	CLIP-seq
MIRT2635322	hsa-miR-4436b-3p	CLIP-seq
MIRT2635323	hsa-miR-4436b-5p	CLIP-seq
MIRT2341339	hsa-miR-4462	CLIP-seq
MIRT2635324	hsa-miR-4533	CLIP-seq
MIRT2341343	hsa-miR-4667-3p	CLIP-seq
MIRT2635326	hsa-miR-4691-3p	CLIP-seq
MIRT2635327	hsa-miR-4725-5p	CLIP-seq
MIRT2341346	hsa-miR-4733-3p	CLIP-seq
MIRT2635328	hsa-miR-4761-5p	CLIP-seq
MIRT2635329	hsa-miR-4793-5p	CLIP-seq
MIRT2635330	hsa-miR-4797-5p	CLIP-seq
MIRT2635331	hsa-miR-498	CLIP-seq
MIRT2635332	hsa-miR-504	CLIP-seq
MIRT2341348	hsa-miR-548b-3p	CLIP-seq
MIRT2635335	hsa-miR-587	CLIP-seq
MIRT2635336	hsa-miR-605	CLIP-seq
MIRT2635337	hsa-miR-767-5p	CLIP-seq

Show/Hide all(12)

GO ID	Ontology	Definition	Evidence	Reference
GO:0004674	Function	Protein serine/threonine kinase activity	IBA	21873635
GO:0004674	Function	Protein serine/threonine kinase activity	IDA	30712867
GO:0005524	Function	ATP binding	IEA
GO:0005634	Component	Nucleus	TAS	9812991
GO:0006468	Process	Protein phosphorylation	IBA	21873635
GO:0006468	Process	Protein phosphorylation	IDA	30712867
GO:0016607	Component	Nuclear speck	IDA
GO:0031267	Function	Small GTPase binding	IPI	30712867
GO:0046579	Process	Positive regulation of Ras protein signal transduction	IBA	21873635
GO:0046579	Process	Positive regulation of Ras protein signal transduction	IDA	30712867
GO:0106310	Function	Protein serine kinase activity	IEA
GO:0106311	Function	Protein threonine kinase activity	IEA

MIM	HGNC	e!Ensembl
604977	11398	ENSG00000204344

Protein

UniProt ID

P49842

Protein name

Winged helix repair factor 1 (Inactive serine/threonine-protein kinase 19) (Protein G11) (Protein RP1) (Tandem winged helix protein formerly known as STK19)

Protein function

DNA-binding protein which is required for efficient transcription-coupled nucleotide excision repair (TC-NER) (PubMed:38252411, PubMed:38890355, PubMed:39353615, PubMed:39547223, PubMed:39547228, PubMed:39547229). Acts as part of a TC-NER comple

PDB

7XRB , 8YCM , 9BZ0 , 9ER2 , 9FD2

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF10494	Stk19	147 → 365	Serine-threonine protein kinase 19	Family

Tissue specificity

TISSUE SPECIFICITY: Monocytes, hepatocytes, epithelial cells, T- and B-lymphocytes. {ECO:0000269|PubMed:8012361}.

Sequence

MQKWFSAFDDAIIQRQWRANPSRGGGGVSFTKEVDTNVATGAPPRRQRVPGRACPWREPI
RGRRGARPGGGDAGGTPGETVRHCSAPEDPIFRFSSLHSYPFPGTIKSRDMSWKRHHLIP
ETFGVKRRRKRGPVESDPLRGEPGSARAAVSELMQLFPRGLFEDALPPIVLRSQVYSLVP
DRTVADRQLKELQEQGEIRIVQLGFDLDAHGIIFTEDYRTRVCDCVLKACDGRPYAGAVQ
KFLASVLPACGDLSFQQDQMTQTFGFRDSEITHLVNAGVLTVRDAGSWWLAVPGAGRFIK
YFVKGRQAVLSMVRKAKYRELLLSELLGRRAPVVVRLGLTYHVHDLIGAQLVDCISTTSG
TLLRLPET

Sequence length

368

Interactions

View interactions

Show/Hide Causal Diseases (10)

Disease term	Disease name	dbSNP ID	References
Causal
Carcinoma	Carcinoma, Basal Cell	rs121912654, rs555607708, rs786202962, rs1564055259	26950094
Diabetes mellitus	Diabetes Mellitus, Insulin-Dependent	rs587776515, rs61730328, rs606231121, rs606231122, rs79020217, rs77625743, rs78378398, rs606231123, rs1362648752, rs104893649, rs80356624, rs80356616, rs80356625, rs80356611, rs104894237 View all (293 more)	17632545
Lung adenocarcinoma	Adenocarcinoma of lung (disorder)	rs28934576, rs121913530, rs397516975, rs587776805, rs121913469, rs121913364, rs121913351, rs121913366, rs397516896, rs397516977, rs397516981, rs397517127, rs121913344, rs727504233, rs121913370 View all (5 more)	19836008
Lung cancer	Malignant neoplasm of lung	rs121913530, rs121913529, rs878855122, rs1057519784, rs770315135	22899653
Age-related macular degeneration	Age related macular degeneration	rs199474657, rs61750120, rs1800728, rs62654397, rs61749423, rs61751412, rs61749439, rs61751398, rs61752417, rs62645946, rs1801269, rs62646860, rs61750142, rs61750145, rs61750152 View all (20 more)	26691988
Melanoma	Cutaneous Melanoma	rs121913315, rs121913323, rs137853080, rs137853081, rs121909232, rs121913388, rs104894094, rs104894095, rs104894097, rs104894098, rs104894099, rs104894109, rs137854599, rs11547328, rs104894340 View all (64 more)	26619011
Multiple sclerosis	Multiple Sclerosis	rs104895219, rs483353022, rs483353023, rs483353028, rs483353029, rs483353024, rs483353030, rs3207617, rs483353031, rs483353032, rs483353033, rs483353034, rs483353035, rs483353036, rs483353039 View all (4 more)	20598377
Myasthenia gravis	Myasthenia Gravis	rs5030818, rs121912815, rs121912817, rs121912818, rs121912821, rs75466054, rs121912822, rs121912823, rs794727516, rs764497513, rs376808313, rs1279554995, rs1554802792, rs369251527, rs372760913 View all (8 more)	23055271
Rheumatoid arthritis	Rheumatoid Arthritis	rs587776843	17804836, 21156761, 19503088
Schizophrenia	Schizophrenia	rs13447324, rs387906932, rs387906933, rs863223354, rs863223355, rs776061422, rs863223349, rs748809996, rs759748655, rs863223353, rs863223350, rs863223356, rs781821239, rs863223348, rs863223346 View all (12 more)	30626913, 30285260

Show/Hide Unknown Diseases (2)

Disease term	Disease name	References	Source
Unknown
Mental depression	Major Depressive Disorder	30626913	ClinVar
Sarcoidosis	Sarcoidosis	26651848	ClinVar

WHR1 (winged helix repair factor 1)