Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
8842
Gene name Gene Name - the full gene name approved by the HGNC.
Prominin 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PROM1
Synonyms (NCBI Gene) Gene synonyms aliases
AC133, CD133, CORD12, MCDR2, MSTP061, PROML1, RP41, STGD4
Chromosome Chromosome number
4
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
4p15.32
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a pentaspan transmembrane glycoprotein. The protein localizes to membrane protrusions and is often expressed on adult stem cells, where it is thought to function in maintaining stem cell properties by suppressing differentiation. Mutatio
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs137853005 G>A,T Pathogenic Stop gained, coding sequence variant, missense variant
rs137853006 G>A Pathogenic, likely-pathogenic Missense variant, coding sequence variant
rs137853907 G>T Pathogenic Stop gained, coding sequence variant
rs185335345 G>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs201644238 G>A,T Likely-pathogenic Coding sequence variant, stop gained, synonymous variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT021645 hsa-miR-142-3p Reporter assay 21394831
MIRT021645 hsa-miR-142-3p Luciferase reporter assay, Western blot 23619912
MIRT622607 hsa-miR-3156-5p HITS-CLIP 23824327
MIRT622606 hsa-miR-7110-3p HITS-CLIP 23824327
MIRT622605 hsa-miR-6817-3p HITS-CLIP 23824327
Transcription factors
Transcription factor Regulation Reference
DNMT1 Unknown 20196115
HOXB4 Unknown 15735039
MYC Unknown 22945648
SP1 Unknown 22945648
SRY Unknown 21947321
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001750 Component Photoreceptor outer segment IEA
GO:0001750 Component Photoreceptor outer segment ISS
GO:0005515 Function Protein binding IPI 18654668, 23084749, 24556617
GO:0005615 Component Extracellular space HDA 16502470
GO:0005783 Component Endoplasmic reticulum IDA 24556617
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
604365 9454 ENSG00000007062
Protein
UniProt ID O43490
Protein name Prominin-1 (Antigen AC133) (Prominin-like protein 1) (CD antigen CD133)
Protein function May play a role in cell differentiation, proliferation and apoptosis (PubMed:24556617). Binds cholesterol in cholesterol-containing plasma membrane microdomains and may play a role in the organization of the apical plasma membrane in epithelial
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05478 Prominin 18 820 Prominin Family
Tissue specificity TISSUE SPECIFICITY: Isoform 1 is selectively expressed on CD34 hematopoietic stem and progenitor cells in adult and fetal bone marrow, fetal liver, cord blood and adult peripheral blood. Isoform 1 is not detected on other blood cells. Isoform 1 is also ex
Sequence
MALVLGSLLLLGLCGNSFSGGQPSSTDAPKAWNYELPATNYETQDSHKAGPIGILFELVH
IFLYVVQPRDFPEDTLRKFLQKAYESKIDYDKPETVILGLKIVYYEAGIILCCVLGLLFI
ILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRKCFAISLLVICIIISIGIFYGFVAN
HQVRTRIKRSRKLADSNFKDLRTLLNETPEQIKYILAQYNTTKDKAFTDLNSINSVLGGG
ILDRLRPNIIPVLDEIKSMATAIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRS
SLNDPLCLVHPSSETCNSIRLSLSQLNSNPELRQLPPVDAELDNVNNVLRTDLDGLVQQG
YQSLNDIPDRVQRQTTTVVAGIKRVLNSIGSDIDNVTQRLPIQDILSAFSVYVNNTESYI
HRNLPTLEEYDSYWWLGGLVICSLLTLIVIFYYLGLLCGVCGYDRHATPTTRGCVSNTGG
VFLMVGVGLSFLFCWILMIIVVLTFVFGANVEKLICEPYTSKELFRVLDTPYLLNEDWEY
YLSGKLFNKSKMKLTFEQVYSDCKKNRGTYGTLHLQNSFNISEHLNINEHTGSISSELES
LKVNLNIFLLGAAGRKNLQDFAACGIDRMNYDSYLAQTGKSPAGVNLLSFAYDLEAKANS
LPPGNLRNSLKRDAQTIKTIHQQRVLPIEQSLSTLYQSVKILQRTGNGLLERVTRILASL
DFAQNFITNNTSSVIIEETKKYGRTIIGYFEHYLQWIEFSISEKVASCKPVATALDTAVD
VFLCSYIIDPLNLFWFGIGKATVFLLPALIFAVKLAKYYR
RMDSEDVYDDVETIPMKNME
NGNNGYHKDHVYGIHNPVMTSPSQH
Sequence length 865
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  Transcriptional misregulation in cancer  
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Cone-rod dystrophy Cone-rod dystrophy 12, cone-rod dystrophy 2 rs747512450, rs766357803, rs374017889, rs1210104601, rs886037881, rs775957498, rs137853907, rs752619497, rs543698823, rs373331232, rs368213921, rs878853400, rs530749007, rs137853006, rs886037880 N/A
cone-rod dystrophy Cone-rod dystrophy rs886037880, rs373680665, rs886037881, rs775957498, rs1719285721, rs1355802816, rs1553901823, rs368213921 N/A
retinal dystrophy Retinal dystrophy rs1460604134, rs1718726537, rs761152494, rs766357803, rs766246531, rs137853907, rs752619497, rs1743846367, rs777497868, rs1577845276, rs1578097528, rs1722845773, rs543698823, rs373331232, rs746174328
View all (15 more)
N/A
Retinitis Pigmentosa Retinitis pigmentosa 41, retinitis pigmentosa, Autosomal recessive retinitis pigmentosa rs374017889, rs766246531, rs373680665, rs1578097528, rs201644238, rs886037612, rs746174328, rs1717541693, rs1302809734, rs137853005, rs1355802816, rs775957498, rs543698823, rs745704627, rs530749007
View all (4 more)
N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Dental caries Dental caries N/A N/A GWAS
Intracranial Aneurysm Intracranial aneurysm N/A N/A GWAS
Retinal Macular Dystrophy retinal macular dystrophy type 2 N/A N/A GenCC
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abdominal Injuries Stimulate 21362081
Abortion Spontaneous Associate 20859302
Adenocarcinoma Associate 18754869, 22072879, 23071857, 25256670, 26191258, 27069317, 27285762
Adenocarcinoma of Lung Associate 21228926, 22529186, 24528019, 26471868, 35087112
Adenoma Associate 28190751
Adjustment Disorders Associate 35186145
Albuminuria Inhibit 31869243
Amyotrophic Lateral Sclerosis Associate 23341441
Aneuploidy Associate 19875502
Antiphospholipid Syndrome Stimulate 32414170