Gene Gene information from NCBI Gene database.
Entrez ID 8842
Gene name Prominin 1
Gene symbol PROM1
Synonyms (NCBI Gene)
AC133CD133CORD12MCDR2MSTP061PROML1RP41STGD4
Chromosome 4
Chromosome location 4p15.32
Summary This gene encodes a pentaspan transmembrane glycoprotein. The protein localizes to membrane protrusions and is often expressed on adult stem cells, where it is thought to function in maintaining stem cell properties by suppressing differentiation. Mutatio
SNPs SNP information provided by dbSNP.
36
SNP ID Visualize variation Clinical significance Consequence
rs137853005 G>A,T Pathogenic Stop gained, coding sequence variant, missense variant
rs137853006 G>A Pathogenic, likely-pathogenic Missense variant, coding sequence variant
rs137853907 G>T Pathogenic Stop gained, coding sequence variant
rs185335345 G>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs201644238 G>A,T Likely-pathogenic Coding sequence variant, stop gained, synonymous variant
miRNA miRNA information provided by mirtarbase database.
91
miRTarBase ID miRNA Experiments Reference
MIRT021645 hsa-miR-142-3p Reporter assay 21394831
MIRT021645 hsa-miR-142-3p Luciferase reporter assayWestern blot 23619912
MIRT622607 hsa-miR-3156-5p HITS-CLIP 23824327
MIRT622606 hsa-miR-7110-3p HITS-CLIP 23824327
MIRT622605 hsa-miR-6817-3p HITS-CLIP 23824327
Transcription factors Transcription factors information provided by TRRUST V2 database.
5
Transcription factor Regulation Reference
DNMT1 Unknown 20196115
HOXB4 Unknown 15735039
MYC Unknown 22945648
SP1 Unknown 22945648
SRY Unknown 21947321
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
39
GO ID Ontology Definition Evidence Reference
GO:0001750 Component Photoreceptor outer segment IEA
GO:0001750 Component Photoreceptor outer segment ISS
GO:0005515 Function Protein binding IPI 18654668, 23084749, 24556617
GO:0005615 Component Extracellular space HDA 16502470
GO:0005783 Component Endoplasmic reticulum IDA 24556617
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604365 9454 ENSG00000007062
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O43490
Protein name Prominin-1 (Antigen AC133) (Prominin-like protein 1) (CD antigen CD133)
Protein function May play a role in cell differentiation, proliferation and apoptosis (PubMed:24556617). Binds cholesterol in cholesterol-containing plasma membrane microdomains and may play a role in the organization of the apical plasma membrane in epithelial
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05478 Prominin 18 820 Prominin Family
Tissue specificity TISSUE SPECIFICITY: Isoform 1 is selectively expressed on CD34 hematopoietic stem and progenitor cells in adult and fetal bone marrow, fetal liver, cord blood and adult peripheral blood. Isoform 1 is not detected on other blood cells. Isoform 1 is also ex
Sequence
MALVLGSLLLLGLCGNSFSGGQPSSTDAPKAWNYELPATNYETQDSHKAGPIGILFELVH
IFLYVVQPRDFPEDTLRKFLQKAYESKIDYDKPETVILGLKIVYYEAGIILCCVLGLLFI
ILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRKCFAISLLVICIIISIGIFYGFVAN
HQVRTRIKRSRKLADSNFKDLRTLLNETPEQIKYILAQYNTTKDKAFTDLNSINSVLGGG
ILDRLRPNIIPVLDEIKSMATAIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRS
SLNDPLCLVHPSSETCNSIRLSLSQLNSNPELRQLPPVDAELDNVNNVLRTDLDGLVQQG
YQSLNDIPDRVQRQTTTVVAGIKRVLNSIGSDIDNVTQRLPIQDILSAFSVYVNNTESYI
HRNLPTLEEYDSYWWLGGLVICSLLTLIVIFYYLGLLCGVCGYDRHATPTTRGCVSNTGG
VFLMVGVGLSFLFCWILMIIVVLTFVFGANVEKLICEPYTSKELFRVLDTPYLLNEDWEY
YLSGKLFNKSKMKLTFEQVYSDCKKNRGTYGTLHLQNSFNISEHLNINEHTGSISSELES
LKVNLNIFLLGAAGRKNLQDFAACGIDRMNYDSYLAQTGKSPAGVNLLSFAYDLEAKANS
LPPGNLRNSLKRDAQTIKTIHQQRVLPIEQSLSTLYQSVKILQRTGNGLLERVTRILASL
DFAQNFITNNTSSVIIEETKKYGRTIIGYFEHYLQWIEFSISEKVASCKPVATALDTAVD
VFLCSYIIDPLNLFWFGIGKATVFLLPALIFAVKLAKYYR
RMDSEDVYDDVETIPMKNME
NGNNGYHKDHVYGIHNPVMTSPSQH
Sequence length 865
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Transcriptional misregulation in cancer  
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
852
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autosomal recessive retinitis pigmentosa Likely pathogenic; Pathogenic rs543698823, rs768303070, rs137853907 RCV001257789
RCV001257790
RCV001257888
Cone-rod dystrophy Pathogenic; Likely pathogenic rs886037880, rs886037881, rs1296826479, rs1553901823, rs775957498, rs373680665, rs1355802816, rs1719285721, rs368213921 RCV002267733
RCV002267734
RCV003324707
RCV001199726
RCV001199727
RCV003324540
RCV003324542
RCV001199725
RCV003324549
Cone-rod dystrophy 12 Likely pathogenic; Pathogenic rs1333833629, rs1733212554, rs1324631413, rs137853907, rs2475275702, rs137853006, rs878853400, rs886037880, rs886037881, rs2475104632, rs373680665, rs543698823, rs766246531, rs373331232, rs1210104601
View all (7 more)
RCV001352997
RCV001353023
RCV005253830
RCV002288584
RCV002289076
RCV000005962
RCV001542528
RCV000240342
RCV000239774
RCV003226085
RCV004586423
RCV000761312
RCV005355783
RCV003236584
RCV000678603
RCV000761332
RCV004796310
RCV003225955
RCV005235496
RCV001198630
RCV001352977
RCV003883533
Cone-rod dystrophy 2 Likely pathogenic; Pathogenic rs543698823, rs1726238223 RCV001255712
RCV001255713
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Uncertain significance; Benign rs749377148, rs115060954 RCV005911023
RCV005909455
Colon adenocarcinoma Benign rs749014145 RCV005867127
Cone-Rod Dystrophy, Dominant Benign; Likely benign; Uncertain significance; Conflicting classifications of pathogenicity rs34269395, rs776360269, rs112952685, rs370477050, rs886059204 RCV000304729
RCV000324335
RCV000302181
RCV000325557
RCV000287210
Familial cancer of breast Benign; Conflicting classifications of pathogenicity rs3815344, rs143470288 RCV005886504
RCV005897779
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Abdominal Injuries Stimulate 21362081
Abortion Spontaneous Associate 20859302
Adenocarcinoma Associate 18754869, 22072879, 23071857, 25256670, 26191258, 27069317, 27285762
Adenocarcinoma of Lung Associate 21228926, 22529186, 24528019, 26471868, 35087112
Adenoma Associate 28190751
Adjustment Disorders Associate 35186145
Albuminuria Inhibit 31869243
Amyotrophic Lateral Sclerosis Associate 23341441
Aneuploidy Associate 19875502
Antiphospholipid Syndrome Stimulate 32414170