Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	8625
Gene name Gene Name - the full gene name approved by the HGNC.	Regulatory factor X associated ankyrin containing protein
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	RFXANK
Synonyms (NCBI Gene) Gene synonyms aliases	ANKRA1, BLS, F14150_1, MHC2D2, RFX-B
Chromosome Chromosome number	19
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	19p13.11
Summary Summary of gene provided in NCBI Entrez Gene.	Major histocompatibility (MHC) class II molecules are transmembrane proteins that have a central role in development and control of the immune system. The protein encoded by this gene, along with regulatory factor X-associated protein and regulatory facto

Show/Hide all(8)

SNP ID	Visualize variation	Clinical significance	Consequence
rs104894709	A>T	Pathogenic, likely-pathogenic	Coding sequence variant, missense variant
rs751386365	T>C	Likely-pathogenic	Coding sequence variant, missense variant
rs753338285	AT>-	Likely-pathogenic	Frameshift variant, coding sequence variant
rs759667201	G>A,C	Pathogenic	Splice donor variant
rs869312922	G>T	Pathogenic	Splice donor variant
rs1568578781	->CTGCC	Pathogenic	Splice donor variant
rs1568579997	TTCGCTTCCTGCTGGAGTGGGTGCGTCCCAGCCCAGCTGGGCAGCTGGGGGGTTCCCG>-	Likely-pathogenic	Intron variant, coding sequence variant, splice donor variant
rs1599784374	T>A	Likely-pathogenic	Coding sequence variant, stop gained

Show/Hide all(32)

miRTarBase ID	miRNA	Experiments	Reference
MIRT439777	hsa-miR-106b-5p	HITS-CLIP	22473208
MIRT439776	hsa-miR-20a-5p	HITS-CLIP	22473208
MIRT439777	hsa-miR-106b-5p	HITS-CLIP	22473208
MIRT726753	hsa-miR-17-5p	HITS-CLIP	22473208
MIRT726752	hsa-miR-20b-5p	HITS-CLIP	22473208
MIRT726751	hsa-miR-93-5p	HITS-CLIP	22473208
MIRT726750	hsa-miR-519d-3p	HITS-CLIP	22473208
MIRT439776	hsa-miR-20a-5p	HITS-CLIP	22473208
MIRT1302629	hsa-miR-125a-5p	CLIP-seq
MIRT1302630	hsa-miR-125b	CLIP-seq
MIRT1302631	hsa-miR-149	CLIP-seq
MIRT1302632	hsa-miR-223	CLIP-seq
MIRT1302633	hsa-miR-2355-5p	CLIP-seq
MIRT1302634	hsa-miR-3064-5p	CLIP-seq
MIRT1302635	hsa-miR-3616-5p	CLIP-seq
MIRT1302636	hsa-miR-3647-5p	CLIP-seq
MIRT1302637	hsa-miR-3659	CLIP-seq
MIRT1302638	hsa-miR-3679-3p	CLIP-seq
MIRT1302639	hsa-miR-375	CLIP-seq
MIRT1302640	hsa-miR-4267	CLIP-seq
MIRT1302641	hsa-miR-4277	CLIP-seq
MIRT1302642	hsa-miR-4314	CLIP-seq
MIRT1302643	hsa-miR-4319	CLIP-seq
MIRT1302644	hsa-miR-4658	CLIP-seq
MIRT1302645	hsa-miR-4682	CLIP-seq
MIRT1302646	hsa-miR-4732-3p	CLIP-seq
MIRT1302647	hsa-miR-4794	CLIP-seq
MIRT1302648	hsa-miR-573	CLIP-seq
MIRT1302649	hsa-miR-574-5p	CLIP-seq
MIRT1302650	hsa-miR-591	CLIP-seq
MIRT1302651	hsa-miR-629	CLIP-seq
MIRT1302652	hsa-miR-670	CLIP-seq

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GO ID	Ontology	Definition	Evidence	Reference
GO:0000977	Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IDA	9806546
GO:0001228	Function	DNA-binding transcription activator activity, RNA polymerase II-specific	IDA	9806546
GO:0003677	Function	DNA binding	IEA
GO:0005515	Function	Protein binding	IPI	10938133, 20211142, 25752541, 31864703, 33961781
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IDA	10938133
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	IDA
GO:0005737	Component	Cytoplasm	IEA
GO:0005829	Component	Cytosol	IDA
GO:0007265	Process	Ras protein signal transduction	IEA
GO:0042826	Function	Histone deacetylase binding	IEA
GO:0045171	Component	Intercellular bridge	IDA
GO:0045348	Process	Positive regulation of MHC class II biosynthetic process	NAS	10938133
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IBA
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IDA	9806546, 10938133
GO:0045944	Process	Positive regulation of transcription by RNA polymerase II	IEA
GO:0090575	Component	RNA polymerase II transcription regulator complex	IPI	9806546, 10938133

MIM	HGNC	e!Ensembl
603200	9987	ENSG00000064490

Protein

UniProt ID

O14593

Protein name

DNA-binding protein RFXANK (Ankyrin repeat family A protein 1) (Regulatory factor X subunit B) (RFX-B) (Regulatory factor X-associated ankyrin-containing protein)

Protein function

Activates transcription from class II MHC promoters. Activation requires the activity of the MHC class II transactivator/CIITA. May regulate other genes in the cell. RFX binds the X1 box of MHC-II promoters (PubMed:10072068, PubMed:10725724, Pub

PDB

3UXG , 3V30 , 6MEW

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00023	Ank	123 → 155	Ankyrin repeat	Repeat
PF00023	Ank	189 → 221	Ankyrin repeat	Repeat

Tissue specificity

TISSUE SPECIFICITY: Ubiquitous.

Sequence

MELTQPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLSLFPCTPEPVNPEPDASVSS
PQAGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKP
DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD
VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ
VIENHILKLFQSNLVPADPE

Sequence length

260

Interactions

View interactions

	KEGG
	Antigen processing and presentation Tuberculosis Primary immunodeficiency

Show/Hide Causal Diseases (1)

Disease merge term	Disease name	dbSNP ID	References
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Immunodeficiency	Inherited Immunodeficiency Diseases	rs751386365	N/A

Show/Hide Text Mining Associations (8)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Bare lymphocyte syndrome 2	Associate	35065305
Genetic Diseases Inborn	Associate	12498778
Malocclusion Angle Class II	Associate	10072068, 12498778, 16848795, 21908431, 26634365, 30644704
Mycoses	Associate	30644704
Obsessive Compulsive Disorder	Associate	26859814
Primary Immunodeficiency Diseases	Associate	20732328
Severe Combined Immunodeficiency	Associate	10072068, 10725724, 10825209, 38441205
X Linked Combined Immunodeficiency Diseases	Associate	21908431, 34052995

RFXANK (regulatory factor X associated ankyrin containing protein)