Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
86
Gene name Gene Name - the full gene name approved by the HGNC.
Actin like 6A
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ACTL6A
Synonyms (NCBI Gene) Gene synonyms aliases
ACTL6, ARPN-BETA, Arp4, BAF53A, INO80K, SMARCN1
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3q26.33
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a family member of actin-related proteins (ARPs), which share significant amino acid sequence identity to conventional actins. Both actins and ARPs have an actin fold, which is an ATP-binding cleft, as a common feature. The ARPs are invo
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs868064163 C>T Likely-pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT030402 hsa-miR-24-3p Microarray 19748357
MIRT031321 hsa-miR-18a-5p Sequencing 20371350
MIRT050215 hsa-miR-25-3p CLASH 23622248
MIRT053344 hsa-miR-206 Luciferase reporter assay, Western blot 23728344
MIRT053344 hsa-miR-206 Luciferase reporter assay, Western blot 23728344
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin HDA 16217013
GO:0001825 Process Blastocyst formation IEA
GO:0003407 Process Neural retina development IEP 18816825
GO:0003682 Function Chromatin binding IBA 21873635
GO:0003713 Function Transcription coactivator activity NAS 8804307
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
604958 24124 ENSG00000136518
Protein
UniProt ID O96019
Protein name Actin-like protein 6A (53 kDa BRG1-associated factor A) (Actin-related protein Baf53a) (ArpNbeta) (BRG1-associated factor 53A) (BAF53A) (INO80 complex subunit K)
Protein function Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Component of SWI/SNF chromatin remodeling complexes that carry out key enzymatic activities, changing chromati
PDB 6LTJ , 7VDV , 7Y8R , 8QR1 , 8X15 , 8X19 , 8X1C , 8XVG , 8XVT , 9C4B , 9C57 , 9C62 , 9C6N
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00022 Actin 8 429 Actin Family
Sequence
Sequence length 429
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  ATP-dependent chromatin remodeling
Thermogenesis
Hepatocellular carcinoma
  RMTs methylate histone arginines
UCH proteinases
DNA Damage Recognition in GG-NER
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Atrial septal defect Atrial Septal Defects rs137852951, rs137852953, rs137852955, rs267607106, rs104893900, rs104893901, rs104893903, rs606231358, rs606231359, rs137852683, rs606231360, rs104893907, rs104894073, rs1585703301, rs104894074
View all (25 more)
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
28649782
Mental retardation Intellectual Disability rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
28649782
Unknown
Disease term Disease name Evidence References Source
Otitis media Recurrent otitis media ClinVar
Associations from Text Mining
Disease Name Relationship Type References
Anemia Aplastic Associate 29596882
Breast Neoplasms Associate 38358781
Carcinoma Hepatocellular Associate 30348114
Carcinoma Non Small Cell Lung Associate 33896314
Carcinoma Squamous Cell Associate 34687603
Coffin Siris syndrome Associate 34906496
Colorectal Neoplasms Associate 30348114, 36526622
Depressive Disorder Major Associate 37098514
DNA Virus Infections Associate 34898277
Glioma Associate 29039584