Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
85476
Gene name Gene Name - the full gene name approved by the HGNC.
G elongation factor mitochondrial 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
GFM1
Synonyms (NCBI Gene) Gene synonyms aliases
COXPD1, EFG, EFG1, EFGM, EGF1, GFM, hEFG1, mtEF-G1
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3q25.32
Summary Summary of gene provided in NCBI Entrez Gene.
Eukaryotes contain two protein translational systems, one in the cytoplasm and one in the mitochondria. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-o
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs62286651 C>A,T Pathogenic, likely-benign Stop gained, coding sequence variant, synonymous variant, non coding transcript variant, 5 prime UTR variant
rs119470018 A>G Pathogenic, likely-pathogenic Non coding transcript variant, missense variant, intron variant, coding sequence variant
rs119470019 C>T Pathogenic 5 prime UTR variant, stop gained, non coding transcript variant, coding sequence variant
rs119470020 T>G Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs139430866 C>T Pathogenic, likely-pathogenic Missense variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT001465 hsa-miR-16-5p pSILAC 18668040
MIRT001465 hsa-miR-16-5p Proteomics;Other 18668040
MIRT1016662 hsa-miR-1179 CLIP-seq
MIRT1016663 hsa-miR-1182 CLIP-seq
MIRT1016664 hsa-miR-1343 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0003723 Function RNA binding HDA 22658674
GO:0003746 Function Translation elongation factor activity IBA
GO:0003746 Function Translation elongation factor activity IDA 19716793
GO:0003746 Function Translation elongation factor activity IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
606639 13780 ENSG00000168827
Protein
UniProt ID Q96RP9
Protein name Elongation factor G, mitochondrial (EF-Gmt) (EC 3.6.5.-) (Elongation factor G 1, mitochondrial) (mEF-G 1) (Elongation factor G1) (hEFG1)
Protein function Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly for
PDB 6VLZ , 6VMI , 6YDP , 6YDW , 7A5K
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00009 GTP_EFTU 44 319 Elongation factor Tu GTP binding domain Domain
PF03144 GTP_EFTU_D2 366 432 Elongation factor Tu domain 2 Domain
PF14492 EFG_III 446 520 Elongation Factor G, domain III Domain
PF03764 EFG_IV 521 642 Elongation factor G, domain IV Domain
PF00679 EFG_C 644 731 Elongation factor G C-terminus Domain
Sequence
Sequence length 751
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Mitochondrial translation elongation
<
Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
combined oxidative phosphorylation deficiency Combined oxidative phosphorylation deficiency rs751069628, rs139430866 N/A
Hepatoencephalopathy hepatoencephalopathy due to combined oxidative phosphorylation defect type 1 rs752400894, rs780762234, rs863224032, rs1174797887, rs753352064, rs761095873, rs1362847020, rs1402362655, rs201408725, rs745718158, rs119470018, rs886058120, rs765266988, rs119470019, rs752037355
View all (15 more)
N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Leigh Syndrome Leigh syndrome N/A N/A GenCC
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Alzheimer Disease Associate 39952508
Biliary Tract Neoplasms Associate 25217982
Blindness Associate 32776492
Chromosome Aberrations Associate 17160893
Combined Oxidative Phosphorylation Deficiency 1 Associate 38204316
Congenital Disorder Of Glycosylation Type In Associate 28216230
Congenital Disorders of Glycosylation Associate 28216230
CoQ responsive OXPHOS deficiency Associate 28216230
Death Associate 39952508
Epilepsy Associate 32776492