Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
8546
Gene name Gene Name - the full gene name approved by the HGNC.
Adaptor related protein complex 3 subunit beta 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
AP3B1
Synonyms (NCBI Gene) Gene synonyms aliases
ADTB3, ADTB3A, HPS, HPS2, PE
Disease Acronyms (UniProt) Disease acronyms from UniProt database
HPS2
Chromosome Chromosome number
5
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
5q14.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein that may play a role in organelle biogenesis associated with melanosomes, platelet dense granules, and lysosomes. The encoded protein is part of the heterotetrameric AP-3 protein complex which interacts with the scaffolding pro
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121908904 A>C Pathogenic Coding sequence variant, missense variant
rs121908905 T>A,C Pathogenic Stop gained, coding sequence variant, missense variant
rs121908906 G>A Pathogenic Stop gained, coding sequence variant
rs121908907 C>A Pathogenic Stop gained, coding sequence variant
rs146503597 C>T Conflicting-interpretations-of-pathogenicity, likely-benign, uncertain-significance Coding sequence variant, missense variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT001387 hsa-miR-1-3p pSILAC 18668040
MIRT006781 hsa-miR-9-5p Luciferase reporter assay, Microarray, qRT-PCR, Western blot 22761433
MIRT006781 hsa-miR-9-5p Luciferase reporter assay, Microarray, qRT-PCR, Western blot 22761433
MIRT001387 hsa-miR-1-3p Proteomics;Other 18668040
MIRT024966 hsa-miR-214-3p Microarray;Other 19859982
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000902 Process Cell morphogenesis IEA
GO:0002224 Process Toll-like receptor signaling pathway IEA
GO:0002244 Process Hematopoietic progenitor cell differentiation IEA
GO:0003016 Process Respiratory system process IEA
GO:0005515 Function Protein binding IPI 32814053
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
603401 566 ENSG00000132842
Protein
UniProt ID O00203
Protein name AP-3 complex subunit beta-1 (Adaptor protein complex AP-3 subunit beta-1) (Adaptor-related protein complex 3 subunit beta-1) (Beta-3A-adaptin) (Clathrin assembly protein complex 3 beta-1 large chain)
Protein function Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 (AP-3) that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to mem
PDB 9C58 , 9C59 , 9C5A , 9C5B , 9C5C
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01602 Adaptin_N 39 584 Adaptin N terminal region Family
PF14797 SEEEED 671 801 Serine-rich region of AP3B1, clathrin-adaptor complex Family
PF14796 AP3B1_C 813 958 Clathrin-adaptor complex-3 beta-1 subunit C-terminal Family
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:9151686, ECO:0000269|PubMed:9182526}.
Sequence
MSSNSFPYNEQSGGGEATELGQEATSTISPSGAFGLFSSDLKKNEDLKQMLESNKDSAKL
DAMKRIVGMIAKGKNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSISTF
QRALKDPNQLIRASALRVLSSIRVPIIVPIMMLAIKEASADLSPYVRKNAAHAIQKLYSL
DPEQKEMLIEVIEKLLKDKSTLVAGSVVMAFEEVCPDRIDLIHKNYRKLCNLLVDVEEWG
QVVIIHMLTRYARTQFVSPWKEGDELEDNGKNFYESDDDQKEKTDKKKKPYTMDPDHRLL
IRNTKPLLQSRNAAVVMAVAQLYWHISPKSEAGIISKSLVRLLRSNREVQYIVLQNIATM
SIQRKGMFEPYLKSFYVRSTDPTMIKTLKLEILTNLANEANISTLLREFQTYVKSQDKQF
AAATIQTIGRCATNILEVTDTCLNGLVCLLSNRDEIVVAESVVVIKKLLQMQPAQHGEII
KHMAKLLDSITVPVARASILWLIGENCERVPKIAPDVLRKMAKSFTSEDDLVKLQILNLG
AKLYLTNSKQTKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVPN
VKSGALSKYAKKIFLA
QKPAPLLESPFKDRDHFQLGTLSHTLNIKATGYLELSNWPEVAPDPSVRNVEVIELAKEW
TPAGKAKQENSAKKFYSESEEEEDSSDSSSDSESESGSESGEQGESGEEGDSNEDSSEDS
SSEQDSESGRESGLENKRTAKRNSKAKGKSDSEDGEKENEKSKTSDSSNDESSSIEDSSS
DSESESEPESESESRRVTKEK
EKKTKQDRTPLTKDVSLLDLDDFNPVSTPVALPTPALSP
SLMADLEGLHLSTSSSVISVSTPAFVPTKTHVLLHRMSGKGLAAHYFFPRQPCIFGDKMV
SIQITLNNTTDRKIENIHIGEKKLPIGMKMHVFNPIDSLEPEGSITVSMGIDFCDSTQ
TA
SFQLCTKDDCFNVNIQPPVGELLLPVAMSEKDFKKEQGVLTGMNETSAVIIAAPQNFTPS
VIFQKVVNVANVGAVPSGQDNIHRFAAKTVHSGSLMLVTVELKEGSTAQLIINTEKTVIG
SVLLRELKPVLSQG
Sequence length 1094
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Lysosome   Golgi Associated Vesicle Biogenesis
Signaling by BRAF and RAF fusions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Albinism Albinism rs28940876, rs387906560, rs62635045, rs140365820, rs141949212, rs1384042381, rs62635042
Hermansky-pudlak syndrome Hermanski-Pudlak Syndrome, HERMANSKY-PUDLAK SYNDROME 2 rs281865116, rs281865113, rs281865103, rs104893945, rs119471021, rs281865100, rs281865097, rs119471022, rs119471023, rs119471024, rs119471025, rs201227603, rs281865093, rs397507168, rs281865095
View all (101 more)
14566336, 28585318, 10024875, 26684649, 16551969, 11590544
Leukemia Leukemia, Myelocytic, Acute rs121909646, rs121913488, rs587776834, rs752746786, rs869312821, rs767454740, rs1554564297 27903959
Mental retardation Mild Mental Retardation rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
Unknown
Disease term Disease name Evidence References Source
Asthma Asthma 25918132 ClinVar
Multiple myeloma Multiple myeloma MM cells lacking PSMC6 also developed resistance against Carfilzomib (CAR) GWAS, CBGDA
Metabolic Syndrome Metabolic Syndrome GWAS
Diabetes Diabetes GWAS
Associations from Text Mining
Disease Name Relationship Type References
Albinism Oculocutaneous Associate 25312756
Amyotrophic Lateral Sclerosis Associate 33953791
Carcinoma Hepatocellular Associate 26547929
COVID 19 Associate 33867526
Cytokine Release Syndrome Associate 33867526
Griscelli syndrome type 1 Associate 16551969
Hemorrhage Associate 24302998
Hemorrhagic Disorders Associate 30630984
Hermanski Pudlak Syndrome Associate 16551969, 34608437
Hermansky Pudlak syndrome 2 Associate 11590544, 16537806, 19679886, 23215637, 23557002, 24302998, 27889060, 30630984, 34182253