Gene Gene information from NCBI Gene database.
Entrez ID 8546
Gene name Adaptor related protein complex 3 subunit beta 1
Gene symbol AP3B1
Synonyms (NCBI Gene)
ADTB3ADTB3AHPSHPS2PE
Chromosome 5
Chromosome location 5q14.1
Summary This gene encodes a protein that may play a role in organelle biogenesis associated with melanosomes, platelet dense granules, and lysosomes. The encoded protein is part of the heterotetrameric AP-3 protein complex which interacts with the scaffolding pro
SNPs SNP information provided by dbSNP.
10
SNP ID Visualize variation Clinical significance Consequence
rs121908904 A>C Pathogenic Coding sequence variant, missense variant
rs121908905 T>A,C Pathogenic Stop gained, coding sequence variant, missense variant
rs121908906 G>A Pathogenic Stop gained, coding sequence variant
rs121908907 C>A Pathogenic Stop gained, coding sequence variant
rs146503597 C>T Conflicting-interpretations-of-pathogenicity, likely-benign, uncertain-significance Coding sequence variant, missense variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
185
miRTarBase ID miRNA Experiments Reference
MIRT001387 hsa-miR-1-3p pSILAC 18668040
MIRT006781 hsa-miR-9-5p Luciferase reporter assayMicroarrayqRT-PCRWestern blot 22761433
MIRT006781 hsa-miR-9-5p Luciferase reporter assayMicroarrayqRT-PCRWestern blot 22761433
MIRT001387 hsa-miR-1-3p Proteomics;Other 18668040
MIRT024966 hsa-miR-214-3p Microarray;Other 19859982
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
63
GO ID Ontology Definition Evidence Reference
GO:0000902 Process Cell morphogenesis IEA
GO:0002224 Process Toll-like receptor signaling pathway IEA
GO:0002244 Process Hematopoietic progenitor cell differentiation IEA
GO:0003016 Process Respiratory system process IEA
GO:0005515 Function Protein binding IPI 19934039, 24725412, 27424887, 32814053
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603401 566 ENSG00000132842
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O00203
Protein name AP-3 complex subunit beta-1 (Adaptor protein complex AP-3 subunit beta-1) (Adaptor-related protein complex 3 subunit beta-1) (Beta-3A-adaptin) (Clathrin assembly protein complex 3 beta-1 large chain)
Protein function Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 (AP-3) that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to mem
PDB 9C58 , 9C59 , 9C5A , 9C5B , 9C5C
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01602 Adaptin_N 39 584 Adaptin N terminal region Family
PF14797 SEEEED 671 801 Serine-rich region of AP3B1, clathrin-adaptor complex Family
PF14796 AP3B1_C 813 958 Clathrin-adaptor complex-3 beta-1 subunit C-terminal Family
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:9151686, ECO:0000269|PubMed:9182526}.
Sequence
MSSNSFPYNEQSGGGEATELGQEATSTISPSGAFGLFSSDLKKNEDLKQMLESNKDSAKL
DAMKRIVGMIAKGKNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSISTF
QRALKDPNQLIRASALRVLSSIRVPIIVPIMMLAIKEASADLSPYVRKNAAHAIQKLYSL
DPEQKEMLIEVIEKLLKDKSTLVAGSVVMAFEEVCPDRIDLIHKNYRKLCNLLVDVEEWG
QVVIIHMLTRYARTQFVSPWKEGDELEDNGKNFYESDDDQKEKTDKKKKPYTMDPDHRLL
IRNTKPLLQSRNAAVVMAVAQLYWHISPKSEAGIISKSLVRLLRSNREVQYIVLQNIATM
SIQRKGMFEPYLKSFYVRSTDPTMIKTLKLEILTNLANEANISTLLREFQTYVKSQDKQF
AAATIQTIGRCATNILEVTDTCLNGLVCLLSNRDEIVVAESVVVIKKLLQMQPAQHGEII
KHMAKLLDSITVPVARASILWLIGENCERVPKIAPDVLRKMAKSFTSEDDLVKLQILNLG
AKLYLTNSKQTKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVPN
VKSGALSKYAKKIFLA
QKPAPLLESPFKDRDHFQLGTLSHTLNIKATGYLELSNWPEVAPDPSVRNVEVIELAKEW
TPAGKAKQENSAKKFYSESEEEEDSSDSSSDSESESGSESGEQGESGEEGDSNEDSSEDS
SSEQDSESGRESGLENKRTAKRNSKAKGKSDSEDGEKENEKSKTSDSSNDESSSIEDSSS
DSESESEPESESESRRVTKEK
EKKTKQDRTPLTKDVSLLDLDDFNPVSTPVALPTPALSP
SLMADLEGLHLSTSSSVISVSTPAFVPTKTHVLLHRMSGKGLAAHYFFPRQPCIFGDKMV
SIQITLNNTTDRKIENIHIGEKKLPIGMKMHVFNPIDSLEPEGSITVSMGIDFCDSTQ
TA
SFQLCTKDDCFNVNIQPPVGELLLPVAMSEKDFKKEQGVLTGMNETSAVIIAAPQNFTPS
VIFQKVVNVANVGAVPSGQDNIHRFAAKTVHSGSLMLVTVELKEGSTAQLIINTEKTVIG
SVLLRELKPVLSQG
Sequence length 1094
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Lysosome   Golgi Associated Vesicle Biogenesis
Signaling by BRAF and RAF fusions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
833
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
AP3B1-related disorder Likely pathogenic rs1746249107 RCV003408551
Autoinflammatory syndrome Pathogenic rs869312838 RCV002261009
Hermansky-Pudlak syndrome Likely pathogenic rs2531000996, rs2531000611 RCV002281855
RCV002510367
Hermansky-Pudlak syndrome 2 Pathogenic; Likely pathogenic rs2112100310, rs1753129765, rs2112518616, rs2112300864, rs2112100189, rs2112100217, rs1744118616, rs2112100020, rs2112357253, rs1746480237, rs2531000611, rs2531000994, rs2531190870, rs2531076982, rs121908904
View all (42 more)
RCV001385072
RCV001383893
RCV001947877
RCV002042734
RCV002007241
RCV001878762
RCV001951031
RCV001946659
RCV001984147
RCV002245311
RCV006272316
RCV002814685
RCV002846887
RCV002872057
RCV000006744
RCV000006746
RCV000006748
RCV000006749
RCV000006750
RCV003011593
RCV000210287
RCV000210297
RCV000210320
RCV000210288
RCV003132956
RCV003326711
RCV003337856
RCV003470221
RCV003461892
RCV003470223
RCV003461894
RCV003461895
RCV003461896
RCV003461898
RCV003461899
RCV003461902
RCV003470224
RCV003470225
RCV003461905
RCV003470227
RCV003470229
RCV003461910
RCV003470230
RCV003507644
RCV003508091
RCV003508376
RCV003508956
RCV003506971
RCV003506946
RCV003616174
RCV003616299
RCV003616601
RCV003616733
RCV004576232
RCV004576233
RCV004577697
RCV001061599
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormal bleeding Uncertain significance rs141102178 RCV001270588
Acute myeloid leukemia Benign rs17190102 RCV005915441
Cholangiocarcinoma Benign rs17190102 RCV005915443
Clear cell carcinoma of kidney Conflicting classifications of pathogenicity rs146871001 RCV005899012
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Albinism Oculocutaneous Associate 25312756
Amyotrophic Lateral Sclerosis Associate 33953791
Carcinoma Hepatocellular Associate 26547929
COVID 19 Associate 33867526
Cytokine Release Syndrome Associate 33867526
Griscelli syndrome type 1 Associate 16551969
Hemorrhage Associate 24302998
Hemorrhagic Disorders Associate 30630984
Hermanski Pudlak Syndrome Associate 16551969, 34608437
Hermansky Pudlak syndrome 2 Associate 11590544, 16537806, 19679886, 23215637, 23557002, 24302998, 27889060, 30630984, 34182253