Gene Gene information from NCBI Gene database.
Entrez ID 84947
Gene name Serine active site containing 1
Gene symbol SERAC1
Synonyms (NCBI Gene)
-
Chromosome 6
Chromosome location 6q25.3
Summary The protein encoded by this gene is a phosphatidylglycerol remodeling protein found at the interface of mitochondria and endoplasmic reticula, where it mediates phospholipid exchange. The encoded protein plays a major role in mitochondrial function and in
SNPs SNP information provided by dbSNP.
27
SNP ID Visualize variation Clinical significance Consequence
rs139301835 G>A,C,T Likely-pathogenic, uncertain-significance Non coding transcript variant, synonymous variant, 5 prime UTR variant, genic upstream transcript variant, stop gained, missense variant, coding sequence variant
rs199632531 G>A Pathogenic Coding sequence variant, stop gained, non coding transcript variant
rs201941476 C>G Likely-pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs387907236 G>A Pathogenic Non coding transcript variant, coding sequence variant, stop gained
rs529232938 G>A Pathogenic Coding sequence variant, 5 prime UTR variant, non coding transcript variant, stop gained
miRNA miRNA information provided by mirtarbase database.
297
miRTarBase ID miRNA Experiments Reference
MIRT019450 hsa-miR-148b-3p Microarray 17612493
MIRT021468 hsa-miR-9-5p Microarray 17612493
MIRT023363 hsa-miR-122-5p Microarray 17612493
MIRT024800 hsa-miR-215-5p Microarray 19074876
MIRT026696 hsa-miR-192-5p Microarray 19074876
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
16
GO ID Ontology Definition Evidence Reference
GO:0005739 Component Mitochondrion HTP 34800366
GO:0005739 Component Mitochondrion IDA 22683713
GO:0005739 Component Mitochondrion IEA
GO:0005741 Component Mitochondrial outer membrane IEA
GO:0005783 Component Endoplasmic reticulum IDA 22683713
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
614725 21061 ENSG00000122335
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96JX3
Protein name Protein SERAC1 (Serine active site-containing protein 1)
Protein function Facilitates the transport of serine from the cytosol to the mitochondria by interacting with and stabilizing Sideroflexin-1 (SFXN1), a mitochondrial serine transporter, playing a fundamental role in the one-carbon cycle responsible for the synth
Family and domains
Tissue specificity TISSUE SPECIFICITY: Widely expressed, with predominant expression in skeletal muscle and brain (PubMed:22683713, PubMed:35235340). In the brain, highest levels are found in the frontal and occipital cortices, cerebellum and hippocampus (PubMed:22683713).
Sequence
MSLAAYCVICCRRIGTSTSPPKSGTHWRDIRNIIKFTGSLILGGSLFLTYEVLALKKAVT
LDTQVVEREKMKSYIYVHTVSLDKGENHGIAWQARKELHKAVRKVLATSAKILRNPFADP
FSTVDIEDHECAVWLLLRKSKSDDKTTRLEAVREMSETHHWHDYQYRIIAQACDPKTLIG
LARSEESDLRFFLLPPPLPSLKEDSSTEEELRQLLASLPQTELDECIQYFTSLALSESSQ
SLAAQKGGLWCFGGNGLPYAESFGEVPSATVEMFCLEAIVKHSEISTHCDKIEANGGLQL
LQRLYRLHKDCPKVQRNIMRVIGNMALNEHLHSSIVRSGWVSIMAEAMKSPHIMESSHAA
RILANLDRETVQEKYQDGVYVLHPQYRTSQPIKADVLFIHGLMGAAFKTWRQQDSEQAVI
EKPMEDEDRYTTCWPKTWLAKDCPALRIISVEYDTSLSDWRARCPMERKSIAFRSNELLR
KLRAAGVGDRPVVWISHSMGGLLVKKMLLEASTKPEMSTVINNTRGIIFYSVPHHGSRLA
EYSVNIRYLLFPSLEVKELSKDSPALKTLQDDFLEFAKDKNFQVLNFVETLPTYIGSMIK
LHVVPVESADLGIGDLIPVDVNHLNICKPKKKDAFLYQRTLQFIREALAKDLEN
Sequence length 654
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
328
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome Pathogenic; Likely pathogenic rs2128409409, rs529232938, rs759351997, rs2128410576, rs1131690799, rs1383515185, rs756065709, rs1785136884, rs978448154, rs927446955, rs797045105, rs767780913, rs780275814, rs199632531, rs886041750
View all (23 more)
RCV001542661
RCV000106307
RCV001799538
RCV002032263
RCV001946827
RCV001948412
RCV002468783
RCV003037199
RCV002691018
RCV002720597
RCV000190622
RCV000029222
RCV003532048
RCV001250054
RCV003765580
RCV003335876
RCV003534026
RCV003531881
RCV003646014
RCV003646718
RCV003647183
RCV003882753
RCV001814159
RCV000494711
RCV000494708
RCV001526393
RCV000029218
RCV000029220
RCV000029221
RCV002298640
RCV000578380
RCV000714974
RCV000714979
RCV000761487
RCV000809456
RCV000850598
RCV000991378
RCV001089492
RCV001261649
Mitochondrial oxidative phosphorylation disorder Likely pathogenic rs139301835 RCV000616269
Ovarian serous cystadenocarcinoma Likely pathogenic rs1274076957 RCV005934695
SERAC1-related disorder Likely pathogenic; Pathogenic rs1245168537, rs1554260851, rs201941476 RCV004729146
RCV003889905
RCV003336206
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Likely benign rs115373253 RCV005919081
Cervical cancer Likely benign rs115373253 RCV005919082
Colon adenocarcinoma Benign; Likely benign rs114493681 RCV005910739
Familial pancreatic carcinoma Benign rs118093738 RCV005886830
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
3 Methylglutaconic Aciduria Associate 25642805, 27485409, 29205472, 31251474, 34751152, 39592976
Anodontia Associate 39592976
Brain Diseases Associate 29205472, 34751152
Breast Neoplasms Associate 18460216, 35589867
Cholestasis Associate 25016221
Dystonia Associate 29205472
Focal cortical dysplasia of Taylor Associate 40282380
GSD IV Neuromuscular Form Fatal Perinatal Associate 25016221
Histiocytosis with joint contractures and sensorineural deafness Associate 39592976
Hypoglycemia Associate 29205472