Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	84811
Gene name Gene Name - the full gene name approved by the HGNC.	BUD13 spliceosome associated protein
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	BUD13
Synonyms (NCBI Gene) Gene synonyms aliases	ACHPS, Cwc26, fSAP71
Chromosome Chromosome number	11
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	11q23.3

Show/Hide all(46)

miRTarBase ID	miRNA	Experiments	Reference
MIRT052474	hsa-let-7a-5p	CLASH	23622248
MIRT827708	hsa-miR-1256	CLIP-seq
MIRT827709	hsa-miR-1323	CLIP-seq
MIRT827710	hsa-miR-1910	CLIP-seq
MIRT827711	hsa-miR-3065-5p	CLIP-seq
MIRT827712	hsa-miR-421	CLIP-seq
MIRT827713	hsa-miR-4264	CLIP-seq
MIRT827714	hsa-miR-4272	CLIP-seq
MIRT827715	hsa-miR-455-3p	CLIP-seq
MIRT827716	hsa-miR-4720-5p	CLIP-seq
MIRT827717	hsa-miR-4777-3p	CLIP-seq
MIRT827718	hsa-miR-4799-3p	CLIP-seq
MIRT827719	hsa-miR-548a-3p	CLIP-seq
MIRT827720	hsa-miR-548e	CLIP-seq
MIRT827721	hsa-miR-548f	CLIP-seq
MIRT827722	hsa-miR-548o	CLIP-seq
MIRT827710	hsa-miR-1910	CLIP-seq
MIRT827713	hsa-miR-4264	CLIP-seq
MIRT827715	hsa-miR-455-3p	CLIP-seq
MIRT827717	hsa-miR-4777-3p	CLIP-seq
MIRT2487103	hsa-miR-1228	CLIP-seq
MIRT827708	hsa-miR-1256	CLIP-seq
MIRT827709	hsa-miR-1323	CLIP-seq
MIRT827710	hsa-miR-1910	CLIP-seq
MIRT827711	hsa-miR-3065-5p	CLIP-seq
MIRT2487104	hsa-miR-3182	CLIP-seq
MIRT827712	hsa-miR-421	CLIP-seq
MIRT827713	hsa-miR-4264	CLIP-seq
MIRT827714	hsa-miR-4272	CLIP-seq
MIRT827715	hsa-miR-455-3p	CLIP-seq
MIRT2487105	hsa-miR-4659a-3p	CLIP-seq
MIRT2487106	hsa-miR-4659b-3p	CLIP-seq
MIRT827716	hsa-miR-4720-5p	CLIP-seq
MIRT827717	hsa-miR-4777-3p	CLIP-seq
MIRT827718	hsa-miR-4799-3p	CLIP-seq
MIRT827719	hsa-miR-548a-3p	CLIP-seq
MIRT827720	hsa-miR-548e	CLIP-seq
MIRT827721	hsa-miR-548f	CLIP-seq
MIRT827722	hsa-miR-548o	CLIP-seq
MIRT2487107	hsa-miR-552	CLIP-seq
MIRT2487103	hsa-miR-1228	CLIP-seq
MIRT827710	hsa-miR-1910	CLIP-seq
MIRT827713	hsa-miR-4264	CLIP-seq
MIRT827715	hsa-miR-455-3p	CLIP-seq
MIRT827717	hsa-miR-4777-3p	CLIP-seq
MIRT2487107	hsa-miR-552	CLIP-seq

Show/Hide all(22)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000398	Process	MRNA splicing, via spliceosome	IBA
GO:0000398	Process	MRNA splicing, via spliceosome	IDA	29360106
GO:0000398	Process	MRNA splicing, via spliceosome	IMP	35670808
GO:0000398	Process	MRNA splicing, via spliceosome	ISS	15565172
GO:0000398	Process	MRNA splicing, via spliceosome	NAS	31744343
GO:0003723	Function	RNA binding	HDA	22658674
GO:0005515	Function	Protein binding	IPI	22365833, 25416956, 28514442, 31515488, 32296183, 33961781, 39251607
GO:0005634	Component	Nucleus	IDA	29360106
GO:0005634	Component	Nucleus	IEA
GO:0005634	Component	Nucleus	IMP	35670808
GO:0005634	Component	Nucleus	NAS	31744343
GO:0005654	Component	Nucleoplasm	IDA
GO:0005654	Component	Nucleoplasm	TAS
GO:0005681	Component	Spliceosomal complex	IEA
GO:0005681	Component	Spliceosomal complex	NAS	31744343
GO:0005684	Component	U2-type spliceosomal complex	IBA
GO:0005686	Component	U2 snRNP	NAS	31744343
GO:0006397	Process	MRNA processing	IEA
GO:0008380	Process	RNA splicing	IEA
GO:0070274	Component	RES complex	ISS	15565172
GO:0071005	Component	U2-type precatalytic spliceosome	IDA	29360106
GO:1903241	Process	U2-type prespliceosome assembly	NAS	31744343

MIM	HGNC	e!Ensembl
620691	28199	ENSG00000137656

Protein

UniProt ID

Q9BRD0

Protein name

BUD13 homolog

Protein function

Involved in pre-mRNA splicing as component of the activated spliceosome. As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs (Probable). {ECO:0000269|PubMed:29360106, ECO:0000269|PubMed:29361316, EC

PDB

5Z56 , 5Z57 , 5Z58 , 6FF4 , 6FF7 , 7ABI , 7DVQ , 7QTT , 8CH6 , 8I0P , 8I0R

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF09736	Bud13	460 → 602	Pre-mRNA-splicing factor of RES complex	Family

Sequence

MAAAPPLSKAEYLKRYLSGADAGVDRGSESGRKRRKKRPKPGGAGGKGMRIVDDDVSWTA
ISTTKLEKEEEEDDGDLPVVAEFVDERPEEVKQMEAFRSSAKWKLLGGHNEDLPSNRHFR
HDTPDSSPRRVRHGTPDPSPRKDRHDTPDPSPRRARHDTPDPSPLRGARHDSDTSPPRRI
RHDSSDTSPPRRARHDSPDPSPPRRPQHNSSGASPRRVRHDSPDPSPPRRARHGSSDISS
PRRVHNNSPDTSRRTLGSSDTQQLRRARHDSPDLAPNVTYSLPRTKSGKAPERASSKTSP
HWKESGASHLSFPKNSKYEYDPDISPPRKKQAKSHFGDKKQLDSKGDCQKATDSDLSSPR
HKQSPGHQDSDSDLSPPRNRPRHRSSDSDLSPPRRRQRTKSSDSDLSPPRRSQPPGKKAA
HMYSGAKTGLVLTDIQREQQELKEQDQETMAFEAEFQYAETVFRDKSGRKRNLKLERLEQ
RRKAEKDSERDELYAQWGKGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQER
EGDPMANFIKKNKAKENKNKKVRPRYSGPAPPPNRFNIWPGYRWDGVDRSNGFEQKRFAR
LASKKAVEELAYKWSVEDM

Sequence length

619

Interactions

View interactions

Show/Hide Unknown Diseases (3)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Coronary artery disease	Coronary artery disease	N/A	N/A	GWAS
Metabolic Syndrome	Metabolic syndrome (bivariate traits), Metabolic syndrome	N/A	N/A	GWAS
Progeroid Syndrome	progeroid syndrome	N/A	N/A	GenCC

Show/Hide Text Mining Associations (14)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Carcinogenesis	Associate	37382881
Colorectal Neoplasms	Associate	37382881
Coronary Artery Disease	Associate	27257688, 28257648
Coronary Disease	Associate	29339699
Cutis Laxa Autosomal Recessive Type IIB	Associate	35670808
Developmental Disabilities	Associate	35670808
Dyslipidemias	Associate	27257688, 28610615
Hyperlipoproteinemia Type II	Associate	28473662
Hypertriglyceridemia	Associate	28473662
Lipodystrophy	Associate	35670808
Metabolic Syndrome	Associate	22170361, 27827461, 28659142, 31910446, 33986338, 38201907
Neoplasms	Associate	37382881
Obesity	Associate	31662442
Prostatic Neoplasms	Associate	34861864

BUD13 (BUD13 spliceosome associated protein)