Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
8481
Gene name Gene Name - the full gene name approved by the HGNC.
OFD1 centriole and centriolar satellite protein
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
OFD1
Synonyms (NCBI Gene) Gene synonyms aliases
71-7A, CXorf5, JBTS10, RP23, SGBS2
Chromosome Chromosome number
X
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
Xp22.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene is located on the X chromosome and encodes a centrosomal protein. A knockout mouse model has been used to study the effect of mutations in this gene. The mouse gene is also located on the X chromosome, however, unlike the human gene it is not su
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs122460150 A>C Pathogenic Coding sequence variant, missense variant
rs139444990 G>A Conflicting-interpretations-of-pathogenicity Missense variant, upstream transcript variant, coding sequence variant, 5 prime UTR variant, genic upstream transcript variant
rs143954823 C>G Conflicting-interpretations-of-pathogenicity, likely-benign, benign Missense variant, coding sequence variant
rs199902986 A>G Conflicting-interpretations-of-pathogenicity Upstream transcript variant, genic upstream transcript variant, intron variant, splice acceptor variant
rs201675886 T>C Conflicting-interpretations-of-pathogenicity Genic upstream transcript variant, intron variant, 5 prime UTR variant, coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT029155 hsa-miR-26b-5p Microarray 19088304
MIRT050901 hsa-miR-17-5p CLASH 23622248
MIRT2286724 hsa-miR-1253 CLIP-seq
MIRT2286725 hsa-miR-4434 CLIP-seq
MIRT2286726 hsa-miR-4516 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000278 Process Mitotic cell cycle ISS
GO:0005515 Function Protein binding IPI 17761535, 19800048, 20835237, 21988832, 23789104, 24089205, 24997988, 26496610, 26638075, 33368531, 33934390
GO:0005576 Component Extracellular region IEA
GO:0005634 Component Nucleus IEA
GO:0005737 Component Cytoplasm IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
300170 2567 ENSG00000046651
Protein
UniProt ID O75665
Protein name Centriole and centriolar satellite protein OFD1 (Oral-facial-digital syndrome 1 protein) (Protein 71-7A)
Protein function Component of the centrioles controlling mother and daughter centrioles length. Recruits to the centriole IFT88 and centriole distal appendage-specific proteins including CEP164 (By similarity). Involved in the biogenesis of the cilium, a centrio
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16045 LisH_2 74 101 LisH Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed. Expressed in 9 and 14 weeks old embryos in metanephric mesenchyme, oral mucosa, lung, heart, nasal and cranial cartilage, and brain. Expressed in metanephros, brain, tongue, and limb. {ECO:0000269|PubMed:12595504}.
Sequence
MMAQSNMFTVADVLSQDELRKKLYQTFKDRGILDTLKTQLRNQLIHELMHPVLSGELQPR
SISVEGSSLLIGASNSLVADHLQRCGYEYSLSVFFPESGLAKEKVFTMQDLLQLIKINPT
SSLYKSLVSGSDKENQKGFLMHFLKELAEYHQAKESCNMETQTSSTFNRDSLAEKLQLID
DQFADAYPQRIKFESLEIKLNEYKREIEEQLRAEMCQKLKFFKDTEIAKIKMEAKKKYEK
ELTMFQNDFEKACQAKSEALVLREKSTLERIHKHQEIETKEIYAQRQLLLKDMDLLRGRE
AELKQRVEAFELNQKLQEEKHKSITEALRRQEQNIKSFEETYDRKLKNELLKYQLELKDD
YIIRTNRLIEDERKNKEKAVHLQEELIAINSKKEELNQSVNRVKELELELESVKAQSLAI
TKQNHMLNEKVKEMSDYSLLKEEKLELLAQNKLLKQQLEESRNENLRLLNRLAQPAPELA
VFQKELRKAEKAIVVEHEEFESCRQALHKQLQDEIEHSAQLKAQILGYKASVKSLTTQVA
DLKLQLKQTQTALENEVYCNPKQSVIDRSVNGLINGNVVPCNGEISGDFLNNPFKQENVL
ARMVASRITNYPTAWVEGSSPDSDLEFVANTKARVKELQQEAERLEKAFRSYHRRVIKNS
AKSPLAAKSPPSLHLLEAFKNITSSSPERHIFGEDRVVSEQPQVGTLEERNDVVEALTGS
AASRLRGGTSSRRLSSTPLPKAKRSLESEMYLEGLGRSHIASPSPCPDRMPLPSPTESRH
SLSIPPVSSPPEQKVGLYRRQTELQDKSEFSDVDKLAFKDNEEFESSFESAGNMPRQLEM
GGLSPAGDMSHVDAAAAAVPLSYQHPSVDQKQIEEQKEEEKIREQQVKERRQREERRQSN
LQEVLERERRELEKLYQERKMIEESLKIKIKKELEMENELEMSNQEIKDKSAHSENPLEK
YMKIIQQEQDQESADKSSKKMVQEGSLVDTLQSSDKVESLTGFSHEELDDSW
Sequence length 1012
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Regulation of PLK1 Activity at G2/M Transition
Loss of Nlp from mitotic centrosomes
Recruitment of mitotic centrosome proteins and complexes
Loss of proteins required for interphase microtubule organization from the centrosome
Recruitment of NuMA to mitotic centrosomes
Hedgehog 'off' state
Anchoring of the basal body to the plasma membrane
AURKA Activation by TPX2
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Ciliary dyskinesia primary ciliary dyskinesia rs797044945, rs312262868, rs1569122408, rs1060500123, rs1569162748 N/A
Joubert Syndrome Joubert syndrome 10 rs1131691889, rs312262895, rs312262894, rs398122866, rs863225211, rs863225212, rs312262830 N/A
Orofaciodigital Syndrome orofaciodigital syndrome i rs312262845, rs1602826217, rs312262858, rs1555901146, rs1602942625, rs1555900675, rs1555900734, rs312262863, rs1555901137, rs312262868, rs1555901169, rs122460150, rs1555904480, rs312262822, rs312262887
View all (9 more)
N/A
Orofaciodigital syndrome Orofacial-digital syndrome III rs886039813 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Congenital anomalies of kidney and urinary tract Congenital anomaly of kidney and urinary tract N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Agenesis of Cerebellar Vermis Associate 22619378, 30581852
Autism Spectrum Disorder Associate 32193494
Autistic Disorder Associate 36833254
Brachydactyly Associate 31243241
Calcinosis Associate 25180832
Carcinogenesis Associate 19587378
Ciliary Motility Disorders Associate 39180133, 39766900
Ciliopathies Associate 22619378, 23033313, 35398350, 35764379
Cleft Palate Associate 22723972
Congenital Abnormalities Associate 36833254