Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
84343
Gene name Gene Name - the full gene name approved by the HGNC.
HPS3 biogenesis of lysosomal organelles complex 2 subunit 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
HPS3
Synonyms (NCBI Gene) Gene synonyms aliases
BLOC2S1, SUTAL
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3q24
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein containing a potential clathrin-binding motif, consensus dileucine signals, and tyrosine-based sorting signals for targeting to vesicles of lysosomal lineage. The encoded protein may play a role in organelle biogenesis associat
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121908316 C>T Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs200079039 G>T Likely-pathogenic Coding sequence variant, non coding transcript variant, stop gained
rs201227603 G>A Pathogenic Splice donor variant
rs281865093 T>G Pathogenic Splice donor variant
rs748883997 G>- Pathogenic Intron variant, coding sequence variant, non coding transcript variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT039577 hsa-miR-636 CLASH 23622248
MIRT609014 hsa-miR-410-3p HITS-CLIP 24906430
MIRT609013 hsa-miR-5011-5p HITS-CLIP 24906430
MIRT609012 hsa-miR-3689a-5p HITS-CLIP 24906430
MIRT609011 hsa-miR-3689b-5p HITS-CLIP 24906430
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 25189619
GO:0005737 Component Cytoplasm IBA 21873635
GO:0006996 Process Organelle organization IBA 21873635
GO:0031084 Component BLOC-2 complex IBA 21873635
GO:0031084 Component BLOC-2 complex IPI 15030569
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
606118 15597 ENSG00000163755
Protein
UniProt ID Q969F9
Protein name BLOC-2 complex member HPS3 (Hermansky-Pudlak syndrome 3 protein)
Protein function Involved in early stages of melanosome biogenesis and maturation.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF14761 HPS3_N 3 212 Hermansky-Pudlak syndrome 3 Domain
PF14762 HPS3_Mid 256 642 Hermansky-Pudlak syndrome 3, middle region Domain
PF14763 HPS3_C 651 1002 Hermansky-Pudlak syndrome 3, C-terminal Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed. Higher levels of expression are observed in kidney, liver and placenta.
Sequence
MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFST
LGRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTENSRVCIRMIGHNVEGPFSKA
FRDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFSLKYQIINEEFSLLDFERSLI
IHIDNITPVEVSFCVGYVAVMSDLEVLIVKLE
SGPKNGERVHHHPHKTNNRIRRTEEGIS
NEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPD
ISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKS
VELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPV
SMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPP
VAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLE
PGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQ
KYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQV
PHILCSPSMKNINPLTAM
SYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQR
KGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVD
FWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPW
VHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTR
LKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSS
LKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKP
LT
Sequence length 1004
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Colorectal cancer Colorectal Carcinoma rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
View all (467 more)
Hermansky-pudlak syndrome Hermanski-Pudlak Syndrome, HERMANSKY-PUDLAK SYNDROME 3 rs281865116, rs281865113, rs281865103, rs104893945, rs119471021, rs281865100, rs281865097, rs119471022, rs119471023, rs119471024, rs119471025, rs201227603, rs281865093, rs397507168, rs281865095
View all (101 more)
25525159, 11590544, 28284561, 11455388
Nystagmus Nystagmus rs137852207, rs137852208, rs1928435502, rs137852209, rs137852210, rs1929191668, rs137852211, rs137852212, rs2124209414, rs387906720, rs387906721, rs1602791884, rs786205896
Unknown
Disease term Disease name Evidence References Source
Hermansky-Pudlak Syndrome Without Pulmonary Fibrosis Hermansky-Pudlak syndrome without pulmonary fibrosis GenCC
Associations from Text Mining
Disease Name Relationship Type References
Albinism Associate 33808351, 35488210
Blood Platelet Disorders Associate 38007062
Hermanski Pudlak Syndrome Associate 11590544, 16159387, 16417222, 24766090, 30990103, 31880485, 34608437, 36672886, 38007062
Hermansky Pudlak syndrome 2 Associate 11590544
Inflammatory Bowel Diseases Associate 33423334
Menorrhagia Stimulate 30659653
Vision Disorders Associate 11590544